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    RpS13 ribosomal protein S13 [ Plutella xylostella (diamondback moth) ]

    Gene ID: 105388947, updated on 23-May-2024

    Summary

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    Gene symbol
    RpS13
    Gene description
    ribosomal protein S13
    Locus tag
    PLXY1_LOCUS9746
    See related
    EnsemblRapid:ENSPXYG00000014998
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Plutella xylostella
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Plutellidae; Plutella
    Orthologs
    fruit fly all
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    Genomic context

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    See RpS13 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current ilPluXylo3.1 (GCF_932276165.1) 23 NC_064003.1 (3975175..3976258, complement)
    102 previous assembly Haplomerged_assembly (GCF_905116875.1) Unplaced Scaffold NW_024011272.1 (4222287..4223370, complement)

    Chromosome 23 - NC_064003.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105388950 Neighboring gene SCY1-like protein 2 Neighboring gene TM2 domain-containing protein 2 amaretto Neighboring gene NADH dehydrogenase (ubiquinone) B15 subunit Neighboring gene uncharacterized LOC119694853 Neighboring gene trafficking protein particle complex subunit 31

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables small ribosomal subunit rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein uS15
    Names
    40S ribosomal protein S13
    NP_001292452.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001305523.1 → NP_001292452.1  small ribosomal subunit protein uS15

      See identical proteins and their annotated locations for NP_001292452.1

      Status: PROVISIONAL

      Source sequence(s)
      AB180431
      UniProtKB/Swiss-Prot
      Q8I7U0
      UniProtKB/TrEMBL
      Q6F459
      Related
      ENSPXYP00000017376.1, ENSPXYT00000024662.1
      Conserved Domains (3) summary
      PTZ00072
      Location:4 → 151
      PTZ00072; 40S ribosomal protein S13; Provisional
      cd00353
      Location:70 → 145
      Ribosomal_S15p_S13e; Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. ...
      pfam08069
      Location:4 → 60
      Ribosomal_S13_N; Ribosomal S13/S15 N-terminal domain

    RefSeqs of Annotated Genomes: Plutella xylostella Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ilPluXylo3.1

    Genomic

    1. NC_064003.1 Reference ilPluXylo3.1

      Range
      3975175..3976258 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8I7U0.3 GenPept UniProtKB/Swiss-Prot:Q8I7U0

    Gene LinkOut

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