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    SNX9 sorting nexin 9 [ Macaca fascicularis (crab-eating macaque) ]

    Gene ID: 101866606, updated on 10-Oct-2024

    Summary

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    Gene symbol
    SNX9
    Gene description
    sorting nexin 9
    See related
    Ensembl:ENSMFAG00000036869
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca fascicularis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SNX9 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 4 NC_088378.1 (66161818..66285931)
    102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 4 NC_052258.1 (105577345..105701670, complement)

    Chromosome 4 - NC_088378.1Genomic Context describing neighboring genes Neighboring gene mucin-2-like Neighboring gene U2 spliceosomal RNA Neighboring gene U7 small nuclear RNA Neighboring gene synaptojanin 2 Neighboring gene serine active site containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs. Osada N, et al. Mol Biol Evol, 2005 Oct. PMID 15944441
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cleavage furrow formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cytokinesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plasma membrane tubulation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sorting nexin-9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference T2T-MFA8v1.0

    Genomic

    1. NC_088378.1 Reference T2T-MFA8v1.0

      Range
      66161818..66285931
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005552201.4 → XP_005552258.1  sorting nexin-9 isoform X2

      UniProtKB/TrEMBL
      Q4R870
      Conserved Domains (3) summary
      cd07285
      Location:273 → 398
      PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
      cd07668
      Location:409 → 618
      BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
      cd11898
      Location:1 → 53
      SH3_SNX9; Src Homology 3 domain of Sorting nexin 9

    2. XM_045391333.2 → XP_045247268.1  sorting nexin-9 isoform X4

    3. XM_045391331.2 → XP_045247266.1  sorting nexin-9 isoform X1

    4. XM_045391332.2 → XP_045247267.1  sorting nexin-9 isoform X3

      UniProtKB/TrEMBL
      A0A7N9D8J4
      Conserved Domains (3) summary
      cd07285
      Location:250 → 375
      PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
      cd07668
      Location:386 → 595
      BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
      cd11898
      Location:4 → 60
      SH3_SNX9; Src Homology 3 domain of Sorting nexin 9

    5. XM_045391334.2 → XP_045247269.1  sorting nexin-9 isoform X5

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001319596.1: Suppressed sequence

      Description
      NM_001319596.1: This RefSeq record was removed as a result of standard genome annotation processing. Contact [email protected] for further information.
    Nucleotide Protein
    Heading Accession and Version

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