U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    RIGI RNA sensor RIG-I [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102361129, updated on 2-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    RIGI
    Gene description
    RNA sensor RIG-I
    See related
    Ensembl:ENSLACG00000000411
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Also known as
    DDX58
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RIGI in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 1 NC_088139.1 (176531104..176600597, complement)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005821071.1 (2172..71137, complement)

    Chromosome 1 - NC_088139.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102347411 Neighboring gene aconitase 1, soluble Neighboring gene uncharacterized LOC135360271 Neighboring gene TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in antiviral innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoplasmic pattern recognition receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable ATP-dependent RNA helicase DDX58
    Names
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
    DExD/H-box helicase 58

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088139.1 Reference fLatCha1.pri

      Range
      176531104..176600597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006009537.3 → XP_006009599.1  probable ATP-dependent RNA helicase DDX58

      UniProtKB/TrEMBL
      H2ZST9, H2ZSU0
      Related
      ENSLACP00000000460.2
      Conserved Domains (6) summary
      COG1111
      Location:243 → 808
      MPH1; ERCC4-related helicase [Replication, recombination and repair]
      cd15805
      Location:811 → 925
      RIG-I_C; C-terminal domain of Retinoic acid-inducible gene (RIG)-I protein, a cytoplasmic viral RNA receptor
      cd12090
      Location:474 → 608
      MDA5_ID; Insert domain of MDA5
      pfam00271
      Location:621 → 738
      Helicase_C; Helicase conserved C-terminal domain
      pfam04851
      Location:244 → 415
      ResIII; Type III restriction enzyme, res subunit
      cl14633
      Location:2 → 91
      DD; Death Domain Superfamily of protein-protein interaction domains
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.