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    RNASE10 ribonuclease A family member 10 (inactive) [ Sus scrofa (pig) ]

    Gene ID: 396701, updated on 5-Mar-2024

    Summary

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    Gene symbol
    RNASE10
    Gene description
    ribonuclease A family member 10 (inactive)
    See related
    Ensembl:ENSSSCG00000002134
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    TRAIN A
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human mouse all
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    Genomic context

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    See RNASE10 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (78390612..78414401, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (83418433..83440160, complement)

    Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene ribonuclease A family member 12 (inactive) Neighboring gene ribonuclease A family member 9 (inactive) Neighboring gene ribonuclease A family member 11 (inactive) Neighboring gene purine nucleoside phosphorylase Neighboring gene phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Train A, an RNase A-like protein without RNase activity, is secreted and reabsorbed by the same epididymal cells under testicular control. Castella S, et al. Biol Reprod, 2004 Nov. PMID 15253924
    2. Identification of a member of a new RNase a family specifically secreted by epididymal caput epithelium. Castella S, et al. Biol Reprod, 2004 Feb. PMID 14561640
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Might participate in an unknown function in the epithelial cells of this first part of the epididymis by an autocrine pathway.
      Title: Train A, an RNase A-like protein without RNase activity, is secreted and reabsorbed by the same epididymal cells under testicular control.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    inactive ribonuclease-like protein 10
    Names
    protein Train A
    putative pancreatic ribonuclease
    ribonuclease-like protein 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007111.1 → NP_001007112.1  inactive ribonuclease-like protein 10 precursor

      See identical proteins and their annotated locations for NP_001007112.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ430467
      UniProtKB/Swiss-Prot
      Q8SPJ0
      UniProtKB/TrEMBL
      A0A8D0WTZ8
      Related
      ENSSSCP00000002332.1, ENSSSCT00000002387.4
      Conserved Domains (1) summary
      cd00163
      Location:105 → 210
      RNase_A; RNase A family, or Pancreatic RNases family; includes vertebrate RNase homologs to the bovine pancreatic ribonuclease A (RNase A). Many of these enzymes have special biological activities; for example, some stimulate the development of vascular ...

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

      Range
      78390612..78414401 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005656307.3 → XP_005656364.1  inactive ribonuclease-like protein 10 isoform X1

      See identical proteins and their annotated locations for XP_005656364.1

      UniProtKB/Swiss-Prot
      Q8SPJ0
      UniProtKB/TrEMBL
      A0A8D0WTZ8
      Conserved Domains (1) summary
      cd00163
      Location:105 → 210
      RNase_A; RNase A family, or Pancreatic RNases family; includes vertebrate RNase homologs to the bovine pancreatic ribonuclease A (RNase A). Many of these enzymes have special biological activities; for example, some stimulate the development of vascular ...

    2. XM_013989061.2 → XP_013844515.1  inactive ribonuclease-like protein 10 isoform X1

      UniProtKB/Swiss-Prot
      Q8SPJ0
      UniProtKB/TrEMBL
      A0A8D0WTZ8
      Conserved Domains (1) summary
      cd00163
      Location:105 → 210
      RNase_A; RNase A family, or Pancreatic RNases family; includes vertebrate RNase homologs to the bovine pancreatic ribonuclease A (RNase A). Many of these enzymes have special biological activities; for example, some stimulate the development of vascular ...

    3. XM_013989060.2 → XP_013844514.1  inactive ribonuclease-like protein 10 isoform X1

      UniProtKB/Swiss-Prot
      Q8SPJ0
      UniProtKB/TrEMBL
      A0A8D0WTZ8
      Conserved Domains (1) summary
      cd00163
      Location:105 → 210
      RNase_A; RNase A family, or Pancreatic RNases family; includes vertebrate RNase homologs to the bovine pancreatic ribonuclease A (RNase A). Many of these enzymes have special biological activities; for example, some stimulate the development of vascular ...

    4. XM_013989063.2 → XP_013844517.1  inactive ribonuclease-like protein 10 isoform X1

      UniProtKB/Swiss-Prot
      Q8SPJ0
      UniProtKB/TrEMBL
      A0A8D0WTZ8
      Conserved Domains (1) summary
      cd00163
      Location:105 → 210
      RNase_A; RNase A family, or Pancreatic RNases family; includes vertebrate RNase homologs to the bovine pancreatic ribonuclease A (RNase A). Many of these enzymes have special biological activities; for example, some stimulate the development of vascular ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8SPJ0.1 GenPept UniProtKB/Swiss-Prot:Q8SPJ0

    Gene LinkOut

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