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    REP15 RAB15 effector protein [ Tupaia chinensis (Chinese tree shrew) ]

    Gene ID: 102485359, updated on 10-Mar-2024

    Summary

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    Gene symbol
    REP15
    Gene description
    RAB15 effector protein
    Locus tag
    TREES_T100009610
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tupaia chinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
    Orthologs
    human mouse all
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    Genomic context

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    See REP15 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006159458.1 (3229677..3231162, complement)

    NW_006159458.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S35 Neighboring gene cytochrome c oxidase subunit NDUFA4-like Neighboring gene PPFIA binding protein 1 Neighboring gene nuclear speckle splicing regulatory protein 1-like Neighboring gene chromosome unknown C12orf71 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006159458 Unplaced Scaffold Reference TupChi_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in receptor recycling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rab15 effector protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TupChi_1.0

    Genomic

    1. NW_006159458.1 Reference TupChi_1.0

      Range
      3229677..3231162 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006140257.3 → XP_006140319.1  rab15 effector protein

      See identical proteins and their annotated locations for XP_006140319.1

      UniProtKB/TrEMBL
      L9LCA1
      Conserved Domains (1) summary
      pfam15208
      Location:1 → 236
      Rab15_effector; Rab15 effector
    Nucleotide Protein
    Heading Accession and Version

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