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    PCGF6 polycomb group ring finger 6 [ Alligator mississippiensis (American alligator) ]

    Gene ID: 102559118, updated on 8-May-2024

    Summary

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    Gene symbol
    PCGF6
    Gene description
    polycomb group ring finger 6
    Locus tag
    Y1Q_0009637
    See related
    EnsemblRapid:ENSAMIG00015004169
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator mississippiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Orthologs
    human mouse all
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    Genomic context

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    See PCGF6 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_09 current rAllMis1 (GCF_030867095.1) 6 NC_081829.1 (98751534..98810059)
    102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017709336.1 (13724475..13788028)

    Chromosome 6 - NC_081829.1Genomic Context describing neighboring genes Neighboring gene ATP synthase membrane subunit k Neighboring gene TATA-box binding protein associated factor 5 Neighboring gene uncharacterized LOC109282831 Neighboring gene 5'-nucleotidase, cytosolic II Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of PRC1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polycomb group RING finger protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAllMis1 Primary Assembly

    Genomic

    1. NC_081829.1 Reference rAllMis1 Primary Assembly

      Range
      98751534..98810059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019486013.2 → XP_019341558.1  polycomb group RING finger protein 6 isoform X2

    2. XM_006273667.4 → XP_006273729.1  polycomb group RING finger protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A151NUN1
      Related
      ENSAMIP00015005024.1, ENSAMIT00015007517.1
      Conserved Domains (2) summary
      pfam00097
      Location:111 → 149
      zf-C3HC4; Zinc finger, C3HC4 type (RING finger)
      pfam16207
      Location:247 → 296
      RAWUL; RAWUL domain RING finger- and WD40-associated ubiquitin-like

    RNA

    1. XR_002089853.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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