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    LOC7487867 uncharacterized LOC7487867 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7487867, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7487867
    Gene description
    uncharacterized LOC7487867
    Locus tag
    POPTR_001G346900v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7487867 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 1 NC_037285.2 (35843807..35845771, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 1 NC_037285.1 (35274752..35276771, complement)

    Chromosome 1 - NC_037285.2Genomic Context describing neighboring genes Neighboring gene peptide deformylase 1B, chloroplastic/mitochondrial Neighboring gene polygalacturonase At1g48100 Neighboring gene DNA (cytosine-5)-methyltransferase DRM2 Neighboring gene DEAD-box ATP-dependent RNA helicase 46

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in maintenance of mitotic sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Ctf18 RFC-like complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC7487867
    Names
    sister chromatid cohesion protein DCC1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037285.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      35843807..35845771 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024605889.2 → XP_024461657.1  uncharacterized protein LOC7487867

      UniProtKB/TrEMBL
      B9GI46
      Conserved Domains (1) summary
      pfam09724
      Location:36 → 359
      DUF2036; Uncharacterized conserved protein (DUF2036)

    2. XM_024605896.2 → XP_024461664.1  uncharacterized protein LOC7487867

      UniProtKB/TrEMBL
      B9GI46
      Conserved Domains (1) summary
      pfam09724
      Location:36 → 359
      DUF2036; Uncharacterized conserved protein (DUF2036)

    3. XM_002298496.4 → XP_002298532.2  uncharacterized protein LOC7487867

      See identical proteins and their annotated locations for XP_002298532.2

      UniProtKB/TrEMBL
      B9GI46
      Conserved Domains (1) summary
      pfam09724
      Location:36 → 359
      DUF2036; Uncharacterized conserved protein (DUF2036)
    Nucleotide Protein
    Heading Accession and Version

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