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    I830077J02Rik RIKEN cDNA I830077J02 gene [ Mus musculus (house mouse) ]

    Gene ID: 433638, updated on 9-Dec-2024

    Summary

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    Official Symbol
    I830077J02Rikprovided by MGI
    Official Full Name
    RIKEN cDNA I830077J02 geneprovided by MGI
    Primary source
    MGI:MGI:3588284
    See related
    Ensembl:ENSMUSG00000074342 AllianceGenome:MGI:3588284
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be located in membrane. Orthologous to human C1orf162 (chromosome 1 open reading frame 162). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in spleen adult (RPKM 3.4), liver E18 (RPKM 2.1) and 14 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See I830077J02Rik in Genome Data Viewer
    Location:
    3 F2.2; 3 46.45 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (105831568..105840039, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (105924252..105932765, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_08637 Neighboring gene predicted gene 5547 Neighboring gene STARR-seq mESC enhancer starr_08638 Neighboring gene transmembrane and immunoglobulin domain containing 3 Neighboring gene STARR-seq mESC enhancer starr_08639 Neighboring gene STARR-positive B cell enhancer ABC_E9566 Neighboring gene STARR-positive B cell enhancer ABC_E9567 Neighboring gene adenosine A3 receptor Neighboring gene STARR-seq mESC enhancer starr_08641 Neighboring gene ATP synthase peripheral stalk-membrane subunit b Neighboring gene WD repeat domain 77

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein C1orf162 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033780.3 → NP_001028952.1  transmembrane protein C1orf162 homolog

      See identical proteins and their annotated locations for NP_001028952.1

      Status: PROVISIONAL

      Source sequence(s)
      AK152510
      Consensus CDS
      CCDS17713.1
      UniProtKB/Swiss-Prot
      B2RWJ4, Q3U7U4
      Related
      ENSMUSP00000096354.3, ENSMUST00000098758.5
      Conserved Domains (1) summary
      cl25995
      Location:42 → 91
      TM_EphA1; Transmembrane domain of Ephrin Receptor A1 Protein Tyrosine Kinase

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      105831568..105840039 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006501648.5 → XP_006501711.1  transmembrane protein C1orf162 homolog isoform X2

      Conserved Domains (1) summary
      cl25995
      Location:18 → 67
      TM_EphA1; Transmembrane domain of Ephrin Receptor A1 Protein Tyrosine Kinase

    2. XM_006501647.5 → XP_006501710.1  transmembrane protein C1orf162 homolog isoform X1

      See identical proteins and their annotated locations for XP_006501710.1

      UniProtKB/Swiss-Prot
      B2RWJ4, Q3U7U4
      Conserved Domains (1) summary
      cl25995
      Location:42 → 91
      TM_EphA1; Transmembrane domain of Ephrin Receptor A1 Protein Tyrosine Kinase
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3U7U4.1 GenPept UniProtKB/Swiss-Prot:Q3U7U4

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