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    Akip1 A kinase interacting protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 57373, updated on 9-Dec-2024

    Summary

    Official Symbol
    Akip1provided by MGI
    Official Full Name
    A kinase interacting protein 1provided by MGI
    Primary source
    MGI:MGI:3041226
    See related
    Ensembl:ENSMUSG00000031023 AllianceGenome:MGI:3041226
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BCA3; ORF27; C11orf17; D7H11orf17; D930014E17Rik; ICRFP703B1614Q5.6
    Summary
    Acts upstream of or within substrate adhesion-dependent cell spreading. Predicted to be located in nucleus and perinuclear region of cytoplasm. Predicted to be active in nucleoplasm. Is expressed in genitourinary system; hippocampus; submandibular gland; and trachea. Orthologous to human AKIP1 (A-kinase interacting protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in testis adult (RPKM 8.7), liver E14 (RPKM 7.9) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Akip1 in Genome Data Viewer
    Location:
    7 E3; 7 57.44 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (109302885..109311393)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (109703678..109712186)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 24888 Neighboring gene ribosomal protein L27A Neighboring gene DENN domain containing 2B Neighboring gene STARR-seq mESC enhancer starr_19802 Neighboring gene STARR-seq mESC enhancer starr_19804 Neighboring gene STARR-positive B cell enhancer ABC_E4965 Neighboring gene VISTA enhancer mm1407 Neighboring gene cDNA sequence BC051019 Neighboring gene predicted gene, 51493 Neighboring gene achaete-scute family bHLH transcription factor 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2)  1 citation
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    A-kinase-interacting protein 1
    Names
    A kinase (PRKA) interacting protein 1
    PKA-interacting protein
    breast cancer-associated gene 3 protein
    proline-rich protein BCA3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_020616.2NP_065641.1  A-kinase-interacting protein 1

      See identical proteins and their annotated locations for NP_065641.1

      Status: VALIDATED

      Source sequence(s)
      AC132584, AK163012
      Consensus CDS
      CCDS21736.1
      UniProtKB/Swiss-Prot
      Q3TR76, Q9JJR5
      UniProtKB/TrEMBL
      Q3TW00
      Related
      ENSMUSP00000033335.6, ENSMUST00000033335.6

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      109302885..109311393
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006508055.3XP_006508118.1  A-kinase-interacting protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006508118.1

    2. XM_011241869.3XP_011240171.1  A-kinase-interacting protein 1 isoform X3

    3. XM_011241870.3XP_011240172.1  A-kinase-interacting protein 1 isoform X4

      UniProtKB/TrEMBL
      Q3TW00
    4. XM_030242826.2XP_030098686.1  A-kinase-interacting protein 1 isoform X2

      UniProtKB/Swiss-Prot
      Q3TR76, Q9JJR5
      UniProtKB/TrEMBL
      Q3TW00
    5. XM_006508057.4XP_006508120.1  A-kinase-interacting protein 1 isoform X5

    6. XM_036153280.1XP_036009173.1  A-kinase-interacting protein 1 isoform X6