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    Cbr-hda-4 Protein CBR-HDA-4 [ Caenorhabditis briggsae ]

    Gene ID: 8585593, updated on 6-Jun-2024

    Summary

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    Gene symbol
    Cbr-hda-4
    Gene description
    Protein CBR-HDA-4
    Locus tag
    CBG_16328
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Caenorhabditis briggsae (strain: AF16)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See Cbr-hda-4 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    9
    Sequence:
    Chromosome: X; NC_013491.2 (1200086..1214517)

    Chromosome X - NC_013491.2Genomic Context describing neighboring genes Neighboring gene Protein CBG16007 Neighboring gene Protein CBR-LGC-53 Neighboring gene Protein CBG16327 Neighboring gene Protein CBG16326

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_013491.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone deacetylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Protein CBR-HDA-4
    XP_002643599.1
    • C. briggsae CBR-HDA-4 protein; contains similarity to Pfam domain PF00850 Histone deacetylase domain contains similarity to Interpro domains IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain);
      Predicted

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013491.2 Reference assembly

      Range
      1200086..1214517
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002643553.1 → XP_002643599.1  Protein CBR-HDA-4 [Caenorhabditis briggsae]

      See identical proteins and their annotated locations for XP_002643599.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      A8XNN9, Q613L4
      UniProtKB/TrEMBL
      A0AAE8ZPV1
      Conserved Domains (1) summary
      cl17011
      Location:480 → 854
      Arginase_HDAC; Arginase-like and histone-like hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q613L4.1

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