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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_042061.2 RefSeqGene
- Range
-
50373..68123
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001303471.3 → NP_001290400.1 thioredoxin-like protein 4A isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) contains an alternate exon in its 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AC090360, AK309098, BC001046, BE385528, BF972457
- UniProtKB/Swiss-Prot
-
P83876
- Conserved Domains (1) summary
-
- cl00388
Location:13 → 103
- Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
-
NM_001305557.2 → NP_001292486.1 thioredoxin-like protein 4A isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. The encoded isoform (3) is shorter than isoform 1, but has the same N- and C-termini.
- Source sequence(s)
-
AC090360, BC001046, BE385528, BF972457, BM922767
- UniProtKB/Swiss-Prot
-
P83876
- Conserved Domains (1) summary
-
- PLN00410
Location:1 → 134
- PLN00410; U5 snRNP protein, DIM1 family; Provisional
-
NM_001305563.2 → NP_001292492.1 thioredoxin-like protein 4A isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) contains two alternate exons in its 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (4) has a shorter N-terminus than isoform 1. Variants 4 and 5 encode the same isoform (4).
- Source sequence(s)
-
AC090360, AV729855, BC001046, BQ011103
- Consensus CDS
-
CCDS82260.1
- UniProtKB/TrEMBL
-
K7ESL1
- Related
- ENSP00000465493.1, ENST00000592957.1
- Conserved Domains (1) summary
-
- cl00388
Location:1 → 71
- Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
-
NM_001305564.2 → NP_001292493.1 thioredoxin-like protein 4A isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) contains an alternate exon in its 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (4) has a shorter N-terminus than isoform 1. Variants 4 and 5 encode the same isoform (4).
- Source sequence(s)
-
AC090360, AV729855, BC001046, BQ011103
- Consensus CDS
-
CCDS82260.1
- UniProtKB/TrEMBL
-
K7ESL1
- Related
- ENSP00000465572.1, ENST00000585474.5
- Conserved Domains (1) summary
-
- cl00388
Location:1 → 71
- Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
-
NM_006701.5 → NP_006692.1 thioredoxin-like protein 4A isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC090360, BC001046, BE385528, BF972457
- Consensus CDS
-
CCDS32852.1
- UniProtKB/Swiss-Prot
- B2RC18, O14834, P83876
- Related
- ENSP00000269601.4, ENST00000269601.10
- Conserved Domains (1) summary
-
- PLN00410
Location:1 → 142
- PLN00410; U5 snRNP protein, DIM1 family; Provisional
RNA
-
NR_131175.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) contains two alternate internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AA923682, AC090360, AK309098, AL522879, BC001046, BE385528, BF972457
-
NR_131176.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) contains an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AA923682, AC090360, BC001046, BE385528, BF972457, BU553165
-
NR_131177.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) lacks an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
- Source sequence(s)
-
AC090360, AW796546, BC001046, BE385528, BF972457
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000018.10 Reference GRCh38.p14 Primary Assembly
- Range
-
79970813..80033936 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060942.1 Alternate T2T-CHM13v2.0
- Range
-
80247334..80310473 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)