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    PFICI_11606 uncharacterized protein [ Pestalotiopsis fici W106-1 ]

    Gene ID: 19276619, updated on 6-Jan-2024

    Summary

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    Gene symbol
    PFICI_11606
    Gene description
    uncharacterized protein
    Locus tag
    PFICI_11606
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pestalotiopsis fici W106-1 (strain: W106-1, nat-host: Camellia sinensis)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Xylariomycetidae; Xylariales; Sporocadaceae; Pestalotiopsis
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    Genomic context

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    See PFICI_11606 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    5

    NW_006917099.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006917099.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_006917099.1 Reference assembly

      Range
      598131..603951 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007840187.1 → XP_007838378.1  uncharacterized protein PFICI_11606 [Pestalotiopsis fici W106-1]

      See identical proteins and their annotated locations for XP_007838378.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      W3WQW7
      Conserved Domains (7) summary
      smart00501
      Location:163 → 256
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
      smart00545
      Location:96 → 137
      JmjN; Small domain found in the jumonji family of transcription factors
      pfam02373
      Location:643 → 759
      JmjC; JmjC domain, hydroxylase
      cd15518
      Location:1342 → 1386
      PHD_Ecm5p_Lid2p_like; PHD finger found in Saccharomyces cerevisiae extracellular matrix protein 5 (Ecm5p), Schizosaccharomyces pombe Lid2 complex component Lid2p, and similar proteins
      pfam02928
      Location:867 → 925
      zf-C5HC2; C5HC2 zinc finger
      pfam08429
      Location:939 → 1286
      PLU-1; PLU-1-like protein
      cl22851
      Location:471 → 515
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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