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    WDHD1 WD repeat and HMG-box DNA binding protein 1 [ Leptonychotes weddellii (Weddell seal) ]

    Gene ID: 102737282, updated on 10-Mar-2024

    Summary

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    Gene symbol
    WDHD1
    Gene description
    WD repeat and HMG-box DNA binding protein 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Leptonychotes weddellii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes
    Orthologs
    human mouse all
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    Genomic context

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    See WDHD1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    101 current LepWed1.0 (GCF_000349705.1) Unplaced Scaffold NW_006383798.1 (240575..299680, complement)

    NW_006383798.1Genomic Context describing neighboring genes Neighboring gene GTP cyclohydrolase 1 Neighboring gene G2/mitotic-specific cyclin-B1 pseudogene Neighboring gene suppressor of cytokine signaling 4 Neighboring gene mitogen-activated protein kinase 1 interacting protein 1 like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006383798 Unplaced Scaffold Reference LepWed1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA-templated DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear replication fork IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WD repeat and HMG-box DNA-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Leptonychotes weddellii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LepWed1.0 Primary Assembly

    Genomic

    1. NW_006383798.1 Reference LepWed1.0 Primary Assembly

      Range
      240575..299680 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031031363.1 → XP_030887223.1  WD repeat and HMG-box DNA-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A7F8R3M4
      Conserved Domains (5) summary
      PTZ00121
      Location:765 → 1079
      PTZ00121; MAEBL; Provisional
      smart00398
      Location:985 → 1038
      HMG; high mobility group
      sd00039
      Location:17 → 54
      7WD40; WD40 repeat [structural motif]
      pfam12341
      Location:399 → 682
      Mcl1_mid; Minichromosome loss protein, Mcl1, middle region
      cl29593
      Location:11 → 257
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_006736455.2 → XP_006736518.1  WD repeat and HMG-box DNA-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A2U3XYQ4
      Conserved Domains (5) summary
      PTZ00121
      Location:797 → 1111
      PTZ00121; MAEBL; Provisional
      smart00398
      Location:1017 → 1070
      HMG; high mobility group
      cd00200
      Location:11 → 289
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:17 → 54
      7WD40; WD40 repeat [structural motif]
      pfam12341
      Location:431 → 714
      Mcl1_mid; Minichromosome loss protein, Mcl1, middle region

    3. XM_031031364.1 → XP_030887224.1  WD repeat and HMG-box DNA-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A7F8R1H6
      Conserved Domains (5) summary
      PTZ00121
      Location:674 → 988
      PTZ00121; MAEBL; Provisional
      smart00398
      Location:894 → 947
      HMG; high mobility group
      sd00039
      Location:17 → 62
      7WD40; WD40 repeat [structural motif]
      pfam12341
      Location:308 → 591
      Mcl1_mid; Minichromosome loss protein, Mcl1, middle region
      cl29593
      Location:5 → 166
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. XM_031031365.1 → XP_030887225.1  WD repeat and HMG-box DNA-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A7F8R1H6
      Conserved Domains (5) summary
      PTZ00121
      Location:674 → 988
      PTZ00121; MAEBL; Provisional
      smart00398
      Location:894 → 947
      HMG; high mobility group
      sd00039
      Location:17 → 62
      7WD40; WD40 repeat [structural motif]
      pfam12341
      Location:308 → 591
      Mcl1_mid; Minichromosome loss protein, Mcl1, middle region
      cl29593
      Location:5 → 166
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    5. XM_031031366.1 → XP_030887226.1  WD repeat and HMG-box DNA-binding protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A7F8R239

    6. XM_031031367.1 → XP_030887227.1  WD repeat and HMG-box DNA-binding protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A7F8R1G3
      Conserved Domains (3) summary
      cd00200
      Location:11 → 289
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:17 → 54
      7WD40; WD40 repeat [structural motif]
      pfam12341
      Location:431 → 714
      Mcl1_mid; Minichromosome loss protein, Mcl1, middle region
    Nucleotide Protein
    Heading Accession and Version

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