U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC100372124 ubiquitin thioesterase ZRANB1-like [ Saccoglossus kowalevskii ]

    Gene ID: 100372124, updated on 19-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100372124
    Gene description
    ubiquitin thioesterase ZRANB1-like
    See related
    EnsemblRapid:LOC100372124
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Saccoglossus kowalevskii
    Lineage
    Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae; Saccoglossus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC100372124 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current Skow_1.1 (GCF_000003605.2) Unplaced Scaffold NW_003130355.1 (648482..663697, complement)

    NW_003130355.1Genomic Context describing neighboring genes Neighboring gene phosphoacetylglucosamine mutase-like Neighboring gene alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like Neighboring gene TWiK family of potassium channels protein 7-like Neighboring gene uncharacterized LOC102810312

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_003130355 unplaced scaffold reference Skow_1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K63-linked polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K29-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K33-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ubiquitin thioesterase ZRANB1-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Saccoglossus kowalevskii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Skow_1.1 Primary Assembly

    Genomic

    1. NW_003130355.1 Reference Skow_1.1 Primary Assembly

      Range
      648482..663697 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006817836.1 → XP_006817899.1  ubiquitin thioesterase ZRANB1-like

      Related
      XP_006817899.1, XM_006817836.1
      Conserved Domains (3) summary
      smart00547
      Location:131 → 153
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:73 → 92
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:421 → 567
      OTU; OTU-like cysteine protease
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials