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    stc1l stanniocalcin 1, like [ Astyanax mexicanus (Mexican tetra) ]

    Gene ID: 103032328, updated on 11-Mar-2024

    Summary

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    Gene symbol
    stc1l
    Gene description
    stanniocalcin 1, like
    See related
    EnsemblRapid:ENSAMXG00025019345
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Astyanax mexicanus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
    Orthologs
    zebrafish all
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    Genomic context

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    See stc1l in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current AstMex3_surface (GCF_023375975.1) 20 NC_064427.1 (45411..46948, complement)
    102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) Unplaced Scaffold NW_019171652.1 (15914..17470)

    Chromosome 20 - NC_064427.1Genomic Context describing neighboring genes Neighboring gene EKC/KEOPS complex subunit LAGE3 Neighboring gene WD repeat domain 45

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hormone activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular calcium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    stanniocalcin 1, like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AstMex3_surface

    Genomic

    1. NC_064427.1 Reference AstMex3_surface

      Range
      45411..46948 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007241376.3 → XP_007241438.1  stanniocalcin 1, like

      UniProtKB/TrEMBL
      A0A8B9H8F5, W5KM68
      Related
      ENSAMXP00025025036.1, ENSAMXT00025035649.1
      Conserved Domains (1) summary
      pfam03298
      Location:8 → 201
      Stanniocalcin; Stanniocalcin family
    Nucleotide Protein
    Heading Accession and Version

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