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    GABPA GA binding protein transcription factor alpha subunit [ Gallus gallus (chicken) ]

    Gene ID: 418478, updated on 3-Dec-2024

    Summary

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    Symbol
    GABPAprovided by CGNC
    Full Name
    GA binding protein transcription factor alpha subunitprovided by CGNC
    Primary source
    CGNC:11756
    See related
    Ensembl:ENSGALG00010010887
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See GABPA in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (102651620..102681746)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (102738795..102768838)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L39 Neighboring gene junctional adhesion molecule 2 Neighboring gene ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6 Neighboring gene amyloid beta precursor protein Neighboring gene cysteine and tyrosine rich 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GA-binding protein alpha chain
    Names
    GA binding protein transcription factor subunit alpha
    GA binding protein transcription factor, alpha subunit 60kDa
    human nuclear respiratory factor-2 subunit alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007858.1 → NP_001007859.1  GA-binding protein alpha chain

      See identical proteins and their annotated locations for NP_001007859.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ720588
      UniProtKB/TrEMBL
      Q5DWF6, Q5ZJ46
      Related
      ENSGALP00010014704.1, ENSGALT00010026064.1
      Conserved Domains (3) summary
      cd08534
      Location:168 → 254
      SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
      smart00413
      Location:320 → 404
      ETS; erythroblast transformation specific domain
      pfam11620
      Location:40 → 119
      GABP-alpha; GA-binding protein alpha chain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      102651620..102681746
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015299140.4 → XP_015154626.1  GA-binding protein alpha chain isoform X1

      UniProtKB/TrEMBL
      Q5DWF6, Q5ZJ46
      Conserved Domains (3) summary
      cd08534
      Location:168 → 254
      SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
      smart00413
      Location:320 → 404
      ETS; erythroblast transformation specific domain
      pfam11620
      Location:40 → 119
      GABP-alpha; GA-binding protein alpha chain

    2. XM_046940249.1 → XP_046796205.1  GA-binding protein alpha chain isoform X1

      UniProtKB/TrEMBL
      Q5DWF6, Q5ZJ46

    3. XM_046940260.1 → XP_046796216.1  GA-binding protein alpha chain isoform X1

      UniProtKB/TrEMBL
      Q5DWF6, Q5ZJ46

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      102738795..102768838
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046907883.1 → XP_046763839.1  GA-binding protein alpha chain isoform X1

      UniProtKB/TrEMBL
      Q5DWF6, Q5ZJ46

    2. XM_046907885.1 → XP_046763841.1  GA-binding protein alpha chain isoform X1

      UniProtKB/TrEMBL
      Q5DWF6, Q5ZJ46

    3. XM_046907884.1 → XP_046763840.1  GA-binding protein alpha chain isoform X1

      UniProtKB/TrEMBL
      Q5DWF6, Q5ZJ46
    Nucleotide Protein Strain
    Heading Accession and Version

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