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    pps protein partner of snf [ Bactrocera dorsalis (oriental fruit fly) ]

    Gene ID: 105223209, updated on 3-Dec-2024

    Summary

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    Gene symbol
    pps
    Gene description
    protein partner of snf
    See related
    EnsemblRapid:LOC105223209
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bactrocera dorsalis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Bactrocera; Bactrocera
    Also known as
    Phf3
    Orthologs
    fruit fly all
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    Genomic context

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    See pps in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current ASM2337382v1 (GCF_023373825.1) 2 NC_064304.1 (81490459..81499969)
    102 previous assembly ASM78921v2 (GCF_000789215.1) Unplaced Scaffold NW_011876268.1 (354681..364188)

    Chromosome 2 - NC_064304.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105223229 Neighboring gene uncharacterized LOC105223207 Neighboring gene dynein light chain Tctex-type protein 2B Neighboring gene uncharacterized LOC105223211 Neighboring gene pygopus family PHD finger

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA sequencing to characterize transcriptional changes of sexual maturation and mating in the female oriental fruit fly Bactrocera dorsalis. Zheng W, et al. BMC Genomics, 2016 Mar 5. PMID 26946038, Free PMC Article
    2. Characterizing the developmental transcriptome of the oriental fruit fly, Bactrocera dorsalis (Diptera: Tephritidae) through comparative genomic analysis with Drosophila melanogaster utilizing modENCODE datasets. Geib SM, et al. BMC Genomics, 2014 Oct 28. PMID 25348373, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC105223209
    Names
    PHD finger protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bactrocera dorsalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2337382v1 Primary Assembly

    Genomic

    1. NC_064304.1 Reference ASM2337382v1 Primary Assembly

      Range
      81490459..81499969
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011200856.4 → XP_011199158.2  uncharacterized protein LOC105223209

      UniProtKB/TrEMBL
      A0A034VYB2
      Related
      XP_011199158.2, XM_011200856.4
    Nucleotide Protein
    Heading Accession and Version

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