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    tmub2 transmembrane and ubiquitin-like domain containing 2 [ Callorhinchus milii (elephant shark) ]

    Gene ID: 103183831, updated on 11-Mar-2024

    Summary

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    Gene symbol
    tmub2
    Gene description
    transmembrane and ubiquitin-like domain containing 2
    See related
    Ensembl:ENSCMIG00000009353
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callorhinchus milii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
    Orthologs
    human zebrafish all
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    Genomic context

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    See tmub2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704764.1 (5905387..5923684)
    100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890141.1 (2326906..2346429, complement)

    NW_024704764.1Genomic Context describing neighboring genes Neighboring gene homologous recombination factor with OB-fold Neighboring gene ankyrin repeat and SOCS box containing 16 Neighboring gene ataxin 7 like 3a Neighboring gene uncharacterized LOC103183829 Neighboring gene upstream binding transcription factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
    2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane and ubiquitin-like domain-containing protein 2
    Names
    transmembrane and ubiquitin-like domain-containing protein 2-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IMCB_Cmil_1.0 Primary Assembly

    Genomic

    1. NW_024704764.1 Reference IMCB_Cmil_1.0 Primary Assembly

      Range
      5905387..5923684
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007901529.2 → XP_007899720.1  transmembrane and ubiquitin-like domain-containing protein 2

      See identical proteins and their annotated locations for XP_007899720.1

      UniProtKB/TrEMBL
      V9KXJ5
      Related
      ENSCMIP00000020260.1
      Conserved Domains (2) summary
      smart00213
      Location:173 → 242
      UBQ; Ubiquitin homologues
      pfam00240
      Location:178 → 244
      ubiquitin; Ubiquitin family
    Nucleotide Protein
    Heading Accession and Version

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