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    XRCC6 X-ray repair cross complementing 6 [ Chlorocebus sabaeus (green monkey) ]

    Gene ID: 103223389, updated on 11-Mar-2024

    Summary

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    Gene symbol
    XRCC6
    Gene description
    X-ray repair cross complementing 6
    See related
    Ensembl:ENSCSAG00000005784
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chlorocebus sabaeus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
    Orthologs
    human mouse all
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    Genomic context

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    See XRCC6 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666045.1 (101209345..101253933, complement)
    100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 19 NC_023660.1 (24160459..24204237)

    NW_023666045.1Genomic Context describing neighboring genes Neighboring gene chromosome 19 C22orf46 homolog Neighboring gene U6 spliceosomal RNA Neighboring gene small nuclear ribonucleoprotein 13 Neighboring gene desumoylating isopeptidase 1 Neighboring gene phosphomannomutase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables damaged DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to X-ray IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to gamma radiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair via nonhomologous end joining IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in telomere maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Ku70:Ku80 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    X-ray repair cross-complementing protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Vero_WHO_p1.0

    Genomic

    1. NW_023666045.1 Reference Vero_WHO_p1.0

      Range
      101209345..101253933 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007975919.2 → XP_007974110.1  X-ray repair cross-complementing protein 6

      See identical proteins and their annotated locations for XP_007974110.1

      UniProtKB/TrEMBL
      A0A0D9R0F3
      Related
      ENSCSAP00000002092.1
      Conserved Domains (1) summary
      TIGR00578
      Location:26 → 608
      ku70; ATP-dependent DNA helicase II, 70 kDa subunit (ku70)

    2. XM_038007364.1 → XP_037863292.1  X-ray repair cross-complementing protein 6

      UniProtKB/TrEMBL
      A0A0D9R0F3
      Conserved Domains (1) summary
      TIGR00578
      Location:26 → 608
      ku70; ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
    Nucleotide Protein
    Heading Accession and Version

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