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    hdac5 histone deacetylase 5 [ Anolis carolinensis (green anole) ]

    Gene ID: 100567204, updated on 3-Dec-2024

    Summary

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    Gene symbol
    hdac5
    Gene description
    histone deacetylase 5
    See related
    Ensembl:ENSACAG00000004207
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anolis carolinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
    Orthologs
    human mouse all
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    Genomic context

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    See hdac5 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 6 NC_085846.1 (23768021..23883416)
    102 previous assembly AnoCar2.0 (GCF_000090745.1) 6 NC_014781.1 (78405480..78516148, complement)

    Chromosome 6 - NC_085846.1Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 42 Neighboring gene coiled-coil domain containing 47 Neighboring gene glucose-6-phosphatase catalytic subunit 3 Neighboring gene LSM12 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone deacetylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone deacetylase 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAnoCar3.1.pri

    Genomic

    1. NC_085846.1 Reference rAnoCar3.1.pri

      Range
      23768021..23883416
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016994632.2 → XP_016850121.1  histone deacetylase 5 isoform X4

      UniProtKB/TrEMBL
      G1KCW7
      Related
      ENSACAP00000004435.3

    2. XM_062957401.1 → XP_062813471.1  histone deacetylase 5 isoform X5

      UniProtKB/TrEMBL
      G1KCW7

    3. XM_016994630.2 → XP_016850119.1  histone deacetylase 5 isoform X1

      UniProtKB/TrEMBL
      G1KCW7

    4. XM_016994631.2 → XP_016850120.1  histone deacetylase 5 isoform X2

      UniProtKB/TrEMBL
      G1KCW7

    5. XM_008113543.3 → XP_008111750.1  histone deacetylase 5 isoform X3

      UniProtKB/TrEMBL
      G1KCW7
      Conserved Domains (2) summary
      cd10007
      Location:691 → 1110
      HDAC5; Histone deacetylase 5
      cl23765
      Location:89 → 176
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

    6. XM_008113544.3 → XP_008111751.1  histone deacetylase 5 isoform X6

      UniProtKB/TrEMBL
      G1KCW7
      Conserved Domains (2) summary
      cd10007
      Location:690 → 1109
      HDAC5; Histone deacetylase 5
      cl23765
      Location:89 → 176
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
    Nucleotide Protein
    Heading Accession and Version

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