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    TRIM46 tripartite motif containing 46 [ Chrysemys picta bellii (western painted turtle) ]

    Gene ID: 101931426, updated on 18-Nov-2024

    Summary

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    Gene symbol
    TRIM46
    Gene description
    tripartite motif containing 46
    See related
    Ensembl:ENSCPBG00000025667
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chrysemys picta bellii (sub-species: bellii)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM46 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_05 current ASM1138683v2 (GCF_011386835.1) 20 NC_088810.1 (24947409..24960657)
    103 previous assembly Chrysemys_picta_BioNano-3.0.4 (GCF_000241765.4) Unplaced Scaffold NW_024902989.1 (671160..687985)

    Chromosome 20 - NC_088810.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 50 member 1 Neighboring gene keratinocyte associated protein 2 Neighboring gene mucin-22-like Neighboring gene mucin-2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anterograde synaptic vesicle transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in microtubule bundle formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in main axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 46

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011386835.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1138683v2

    Genomic

    1. NC_088810.1 Reference ASM1138683v2

      Range
      24947409..24960657
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008171945.4 → XP_008170167.1  tripartite motif-containing protein 46 isoform X1

      UniProtKB/TrEMBL
      A0A8C3IPD1, A0A8C3IPW6
      Related
      ENSCPBP00000037002.1
      Conserved Domains (5) summary
      cd00063
      Location:442 → 522
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00643
      Location:220 → 261
      zf-B_box; B-box zinc finger
      pfam13923
      Location:33 → 68
      zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
      cd12895
      Location:529 → 732
      SPRY_PRY_TRIM46; PRY/SPRY domain in tripartite motif-containing protein 46 (TRIM46)
      cl23765
      Location:268 → 383
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

    2. XM_008171946.4 → XP_008170168.1  tripartite motif-containing protein 46 isoform X2

      UniProtKB/TrEMBL
      A0A8C3IPW6, A0AAJ6SP97
      Related
      ENSCPBP00000037004.1
      Conserved Domains (5) summary
      cd00063
      Location:429 → 509
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00643
      Location:207 → 248
      zf-B_box; B-box zinc finger
      pfam13923
      Location:20 → 55
      zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
      cd12895
      Location:516 → 719
      SPRY_PRY_TRIM46; PRY/SPRY domain in tripartite motif-containing protein 46 (TRIM46)
      cl23765
      Location:255 → 370
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
    Nucleotide Protein
    Heading Accession and Version

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