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    NijC Ninjurin C [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 661764, updated on 10-May-2024

    Summary

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    Gene symbol
    NijC
    Gene description
    Ninjurin C
    Locus tag
    TcasGA2_TC013272
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    Genomic context

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    See NijC in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 3 NC_087396.1 (18775440..18781056, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG7 NC_007422.5 (5957499..5963146)

    Chromosome 3 - NC_087396.1Genomic Context describing neighboring genes Neighboring gene chemosensory protein 6 Neighboring gene chemosensory protein 7 Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene chemosensory protein 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tissue regeneration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ninjurin-1; ninjurin-2
    Names
    AUGUSTUS-3.0.2_31194
    GLEAN_13272
    Ninjurin-1-like Protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087396.1 Reference icTriCast1.1 Primary Assembly

      Range
      18775440..18781056 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008195593.3 → XP_008193815.1  ninjurin-1 isoform X6

      UniProtKB/TrEMBL
      A0A139WFL1
      Conserved Domains (1) summary
      pfam04923
      Location:28 → 129
      Ninjurin; Ninjurin

    2. XM_015981469.2 → XP_015836955.1  ninjurin-2 isoform X3

      Conserved Domains (1) summary
      pfam04923
      Location:28 → 129
      Ninjurin; Ninjurin

    3. XM_015981470.2 → XP_015836956.1  ninjurin-1 isoform X4

      Conserved Domains (1) summary
      pfam04923
      Location:24 → 124
      Ninjurin; Ninjurin

    4. XM_015981471.2 → XP_015836957.1  ninjurin-1 isoform X5

      Conserved Domains (1) summary
      pfam04923
      Location:17 → 117
      Ninjurin; Ninjurin

    5. XM_015981468.2 → XP_015836954.1  ninjurin-1 isoform X1

      Conserved Domains (1) summary
      pfam04923
      Location:28 → 128
      Ninjurin; Ninjurin

    6. XM_008195591.3 → XP_008193813.1  ninjurin-1 isoform X2

      UniProtKB/TrEMBL
      A0A139WFQ9, A0A139WFY2
      Conserved Domains (1) summary
      pfam04923
      Location:28 → 131
      Ninjurin; Ninjurin
    Nucleotide Protein Strain
    Heading Accession and Version

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