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    LOC103446749 homeobox protein knotted-1-like LET6 [ Malus domestica (apple) ]

    Gene ID: 103446749, updated on 15-Jan-2025

    Summary

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    Gene symbol
    LOC103446749
    Gene description
    homeobox protein knotted-1-like LET6
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Malus domestica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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    Genomic context

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    See LOC103446749 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_12 current GDT2T_hap1 (GCF_042453785.1) 10 NC_091670.1 (42507723..42513284, complement)
    102 previous assembly ASM211411v1 (GCF_002114115.1) 10 NC_041798.1 (40743116..40748527, complement)

    Chromosome 10 - NC_091670.1Genomic Context describing neighboring genes Neighboring gene chromatin remodeling protein EBS Neighboring gene uncharacterized LOC103446747 Neighboring gene plant UBX domain-containing protein 4 Neighboring gene uncharacterized protein At4g22160 Neighboring gene uncharacterized LOC103446752

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein knotted-1-like LET6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_042453785.1-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GDT2T_hap1 Primary Assembly

    Genomic

    1. NC_091670.1 Reference GDT2T_hap1 Primary Assembly

      Range
      42507723..42513284 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008385881.4 → XP_008384103.1  homeobox protein knotted-1-like LET6 isoform X2

      Conserved Domains (4) summary
      pfam03789
      Location:274 → 295
      ELK; ELK domain
      pfam03790
      Location:131 → 170
      KNOX1; KNOX1 domain
      pfam03791
      Location:191 → 234
      KNOX2; KNOX2 domain
      pfam05920
      Location:314 → 353
      Homeobox_KN; Homeobox KN domain

    2. XM_008385880.4 → XP_008384102.1  homeobox protein knotted-1-like LET6 isoform X1

      Conserved Domains (4) summary
      pfam03789
      Location:279 → 300
      ELK; ELK domain
      pfam03790
      Location:131 → 170
      KNOX1; KNOX1 domain
      pfam03791
      Location:191 → 234
      KNOX2; KNOX2 domain
      pfam05920
      Location:319 → 358
      Homeobox_KN; Homeobox KN domain
    Nucleotide Protein
    Heading Accession and Version

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