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    CG4004 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 32226, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG4004provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0030418
    Locus tag
    Dmel_CG4004
    See related
    AllianceGenome:FB:FBgn0030418
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG18137; Dmel\CG4004
    Summary
    Located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG4004 in Genome Data Viewer
    Location:
    11B14-11B14; 1-39 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (12744212..12749785)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (12638245..12643818)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene Smrter Neighboring gene long non-coding RNA:CR43963 Neighboring gene antisense RNA:CR45623 Neighboring gene long non-coding RNA:CR44619 Neighboring gene VSR interacting RNA Neighboring gene PAICS bifunctional enzyme

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Hairy transcriptional repression targets and cofactor recruitment in Drosophila. Bianchi-Frias D, et al. PLoS Biol, 2004 Jul. PMID 15252443, Free PMC Article
    2. Protein landscape at Drosophila melanogaster telomere-associated sequence repeats. Antão JM, et al. Mol Cell Biol, 2012 Jun. PMID 22493064, Free PMC Article
    3. Oviposition behaviour in Drosophila melanogaster: Genetic and behavioural decoupling between oviposition acceptance and preference for natural fruits. Fanara JJ, et al. J Evol Biol, 2023 Jan. PMID 36357966
    4. Subcellular localisations of the CPTI collection of YFP-tagged proteins in Drosophila embryos. Lye CM, et al. Development, 2014 Oct. PMID 25294944, Free PMC Article
    5. Transcription factor networks in Drosophila melanogaster. Rhee DY, et al. Cell Rep, 2014 Sep 25. PMID 25242320, Free PMC Article

    See all (28) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    mobile_element

    • Loc: 12746438-12746698 mobile_element_type = transposon:H{}2372

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG4004-PA
    CG4004-PC
    CG4004-PD
    CG4004-PE
    CG4004-PF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      12744212..12749785
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001298237.1 → NP_001285166.1  uncharacterized protein Dmel_CG4004, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285166.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5BHZ5, Q9VYJ7
      Conserved Domains (1) summary
      pfam10545
      Location:19 → 104
      MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like

    2. NM_132596.2 → NP_572824.1  uncharacterized protein Dmel_CG4004, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_572824.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5BHZ5, Q9VYJ7
      Related
      FBpp0073519
      Conserved Domains (1) summary
      pfam10545
      Location:19 → 104
      MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like

    3. NM_001298236.1 → NP_001285165.1  uncharacterized protein Dmel_CG4004, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285165.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5BHZ5, Q9VYJ7
      Conserved Domains (1) summary
      pfam10545
      Location:19 → 104
      MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like

    4. NM_167336.4 → NP_727638.2  uncharacterized protein Dmel_CG4004, isoform F [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7K230, Q95RL5, Q9VYJ6
      Conserved Domains (1) summary
      pfam10545
      Location:14 → 99
      MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like

    5. NM_001272563.1 → NP_001259492.1  uncharacterized protein Dmel_CG4004, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259492.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      E1NZC1, M9PHP0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9PHP0 M9PHP0
    Q5BHZ5 Q5BHZ5
    Q7K230 Q7K230
    Q9VYJ6 Q9VYJ6
    Q9VYJ7 Q9VYJ7

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