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    CG30172 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 246496, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG30172provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0050172
    Locus tag
    Dmel_CG30172
    See related
    AllianceGenome:FB:FBgn0050172
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-AE003462.1; BcDNA:RH70879; DmelCSP1; Dmel\CG30172
    Summary
    Predicted to be located in extracellular region. Is expressed in adult head; embryonic brain; larval nervous system; and larval ventral nerve cord. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG30172 in Genome Data Viewer
    Location:
    60B5-60B5; 2-106 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (24030546..24031427, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (19918069..19918950, complement)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Ejaculatory bulb protein III Neighboring gene Haematopoietic stem/progenitor cell protein 300 Neighboring gene uncharacterized protein Neighboring gene Chip Neighboring gene MAN1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. bfc, a novel serpent co-factor for the expression of croquemort, regulates efferocytosis in Drosophila melanogaster. Zheng Q, et al. PLoS Genet, 2021 Dec. PMID 34860835, Free PMC Article
    2. Genome and EST analyses and expression of a gene family with putative functions in insect chemoreception. Zhou JJ, et al. Chem Senses, 2006 Jun. PMID 16581978
    3. Tissue-specific defects are caused by loss of the Drosophila MAN1 LEM domain protein. Pinto BS, et al. Genetics, 2008 Sep. PMID 18723885, Free PMC Article
    4. Genome-wide measurement of spatial expression in patterning mutants of Drosophila melanogaster. Combs PA, et al. F1000Res, 2017. PMID 28299188, Free PMC Article
    5. An expanded toolkit for Drosophila gene tagging using synthesized homology donor constructs for CRISPR-mediated homologous recombination. Kanca O, et al. Elife, 2022 Jun 20. PMID 35723254, Free PMC Article

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG30172-PA
    CG30172-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      24030546..24031427 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001299882.1 → NP_001286811.1  uncharacterized protein Dmel_CG30172, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286811.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IGB3, Q8MLP9
      Conserved Domains (1) summary
      pfam03392
      Location:30 → 110
      OS-D; Insect pheromone-binding family, A10/OS-D

    2. NM_166649.2 → NP_726402.1  uncharacterized protein Dmel_CG30172, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_726402.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IGB3, Q8MLP9
      Related
      FBpp0072102
      Conserved Domains (1) summary
      pfam03392
      Location:30 → 110
      OS-D; Insect pheromone-binding family, A10/OS-D
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8IGB3 Q8IGB3
    Q8MLP9 Q8MLP9

    Gene LinkOut

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