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    C1h19orf47 similar to human chromosome 19 open reading frame 47 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 292739, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C1h19orf47provided by RGD
    Official Full Name
    similar to human chromosome 19 open reading frame 47provided by RGD
    Primary source
    RGD:1307554
    See related
    EnsemblRapid:ENSRNOG00000018408 AllianceGenome:RGD:1307554
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307554
    Summary
    Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human C19orf47 (chromosome 19 open reading frame 47). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Muscle (RPKM 44.9), Heart (RPKM 29.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C1h19orf47 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (91971879..92010938)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (82844309..82871187)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (84361715..84388767)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene homeodomain interacting protein kinase 4 Neighboring gene phospholipase D family, member 3 Neighboring gene large ribosomal subunit protein uL22-like Neighboring gene AKT serine/threonine kinase 2 Neighboring gene uncharacterized LOC103691074 Neighboring gene tetratricopeptide repeat domain 9B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C19orf47 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109664.2 → NP_001103134.1  uncharacterized protein C19orf47 homolog isoform 1

      See identical proteins and their annotated locations for NP_001103134.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A0G2JVF4, A0A8L2QDC8, A6J9D7
      Related
      ENSRNOP00000024829.4, ENSRNOT00000024829.7
      Conserved Domains (1) summary
      cd09531
      Location:34 → 98
      SAM_CS047; SAM domain of CS047 subfamily

    2. NM_001419446.1 → NP_001406375.1  uncharacterized protein C19orf47 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/Swiss-Prot
      A0JPQ7
      UniProtKB/TrEMBL
      A0A0G2JVF4
      Related
      ENSRNOP00000112087.1, ENSRNOT00000139888.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      91971879..92010938
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006228572.5 → XP_006228634.2  uncharacterized protein C19orf47 homolog isoform X1

      UniProtKB/TrEMBL
      A0A0G2JVF4
      Related
      ENSRNOP00000112250.1, ENSRNOT00000165133.1
      Conserved Domains (1) summary
      cd09531
      Location:34 → 98
      SAM_CS047; SAM domain of CS047 subfamily

    2. XM_039104082.2 → XP_038960010.1  uncharacterized protein C19orf47 homolog isoform X2

      UniProtKB/TrEMBL
      A0A0G2JVF4
      Conserved Domains (2) summary
      pfam17740
      Location:93 → 383
      DUF5577; Family of unknown function (DUF5577)
      pfam18017
      Location:1 → 84
      SAM_4; SAM domain (Sterile alpha motif)

    3. XM_017588898.3 → XP_017444387.1  uncharacterized protein C19orf47 homolog isoform X3

      UniProtKB/TrEMBL
      A0A0G2JVF4
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0JPQ7.1 GenPept UniProtKB/Swiss-Prot:A0JPQ7

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