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    Ccdc24 coiled-coil domain containing 24 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500534, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Ccdc24provided by RGD
    Official Full Name
    coiled-coil domain containing 24provided by RGD
    Primary source
    RGD:1562911
    See related
    EnsemblRapid:ENSRNOG00000019586 AllianceGenome:RGD:1562911
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1562911
    Summary
    Predicted to act upstream of or within blastocyst hatching. Orthologous to human CCDC24 (coiled-coil domain containing 24). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 73.6), Brain (RPKM 41.3) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc24 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (136684206..136697855, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (131398766..131412395, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (136691655..136707197, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486978 Neighboring gene KLF transcription factor 17 Neighboring gene solute carrier family 6 member 9 Neighboring gene uncharacterized LOC120102957 Neighboring gene beta-1,4-galactosyltransferase 2 Neighboring gene ATPase H+ transporting V0 subunit B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Towards Functional Annotation of the Preimplantation Transcriptome: An RNAi Screen in Mammalian Embryos. Cui W, et al. Sci Rep, 2016 Nov 21. PMID 27869233, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    acts_upstream_of_or_within blastocyst hatching ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134626.1 → NP_001128098.1  coiled-coil domain-containing protein 24

      See identical proteins and their annotated locations for NP_001128098.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474008
      UniProtKB/TrEMBL
      A6JZE8
      Conserved Domains (1) summary
      pfam15669
      Location:21 → 216
      CCDC24; Coiled-coil domain-containing protein 24 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      136684206..136697855 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063288250.1 → XP_063144320.1  coiled-coil domain-containing protein 24 isoform X6

    2. XM_039110603.2 → XP_038966531.1  coiled-coil domain-containing protein 24 isoform X10

      Conserved Domains (1) summary
      pfam15669
      Location:21 → 143
      CCDC24; Coiled-coil domain-containing protein 24 family

    3. XM_008764054.3 → XP_008762276.1  coiled-coil domain-containing protein 24 isoform X5

      Conserved Domains (1) summary
      pfam15669
      Location:21 → 230
      CCDC24; Coiled-coil domain-containing protein 24 family

    4. XM_063288251.1 → XP_063144321.1  coiled-coil domain-containing protein 24 isoform X7

    5. XM_063288252.1 → XP_063144322.1  coiled-coil domain-containing protein 24 isoform X8

    6. XM_008764053.4 → XP_008762275.1  coiled-coil domain-containing protein 24 isoform X2

      Conserved Domains (1) summary
      pfam15669
      Location:21 → 226
      CCDC24; Coiled-coil domain-containing protein 24 family

    7. XM_008764052.4 → XP_008762274.1  coiled-coil domain-containing protein 24 isoform X1

      Conserved Domains (1) summary
      pfam15669
      Location:21 → 230
      CCDC24; Coiled-coil domain-containing protein 24 family

    8. XM_006238709.4 → XP_006238771.1  coiled-coil domain-containing protein 24 isoform X3

      Conserved Domains (1) summary
      pfam15669
      Location:21 → 220
      CCDC24; Coiled-coil domain-containing protein 24 family

    9. XM_006238710.4 → XP_006238772.1  coiled-coil domain-containing protein 24 isoform X4

      See identical proteins and their annotated locations for XP_006238772.1

      UniProtKB/TrEMBL
      A0A0G2K9U0, A6JZE6
      Related
      ENSRNOP00000075126.1, ENSRNOT00000081925.3
      Conserved Domains (1) summary
      pfam15669
      Location:21 → 216
      CCDC24; Coiled-coil domain-containing protein 24 family

    10. XM_063288253.1 → XP_063144323.1  coiled-coil domain-containing protein 24 isoform X9

    Nucleotide Protein Strain
    Heading Accession and Version

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