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    Poll DNA polymerase lambda [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

    Gene ID: 103744002, updated on 11-Mar-2024

    Summary

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    Gene symbol
    Poll
    Gene description
    DNA polymerase lambda
    See related
    Ensembl:ENSNGAG00000021402
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nannospalax galili
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
    Orthologs
    human mouse all
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    Genomic context

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    See Poll in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008348586.1 (1800284..1809589, complement)

    NW_008348586.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA70 Neighboring gene beta-transducin repeat containing E3 ubiquitin protein ligase Neighboring gene U1 spliceosomal RNA Neighboring gene deleted in primary ciliary dyskinesia homolog (mouse) Neighboring gene uncharacterized LOC115072438 Neighboring gene F-box and WD repeat domain containing 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008348586 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-directed DNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via nonhomologous end joining IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA polymerase lambda

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference S.galili_v1.0 Primary Assembly

    Genomic

    1. NW_008348586.1 Reference S.galili_v1.0 Primary Assembly

      Range
      1800284..1809589 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008845598.3 → XP_008843820.1  DNA polymerase lambda isoform X3

      See identical proteins and their annotated locations for XP_008843820.1

      UniProtKB/TrEMBL
      A0A8C6RT30
      Conserved Domains (2) summary
      cd00141
      Location:243 → 561
      NT_POLXc; Nucleotidyltransferase (NT) domain of family X DNA Polymerases
      cd17715
      Location:40 → 124
      BRCT_polymerase_lambda; BRCT domain of DNA polymerase lambda and similar proteins

    2. XM_008845597.3 → XP_008843819.1  DNA polymerase lambda isoform X3

      See identical proteins and their annotated locations for XP_008843819.1

      UniProtKB/TrEMBL
      A0A8C6RT30
      Related
      ENSNGAP00000022572.1, ENSNGAT00000028259.1
      Conserved Domains (2) summary
      cd00141
      Location:243 → 561
      NT_POLXc; Nucleotidyltransferase (NT) domain of family X DNA Polymerases
      cd17715
      Location:40 → 124
      BRCT_polymerase_lambda; BRCT domain of DNA polymerase lambda and similar proteins

    3. XM_008845599.2 → XP_008843821.1  DNA polymerase lambda isoform X5

      Conserved Domains (2) summary
      cd00141
      Location:262 → 461
      NT_POLXc; Nucleotidyltransferase (NT) domain of family X DNA Polymerases
      cd17715
      Location:59 → 143
      BRCT_polymerase_lambda; BRCT domain of DNA polymerase lambda and similar proteins

    4. XM_029569658.1 → XP_029425518.1  DNA polymerase lambda isoform X4

      Conserved Domains (2) summary
      cd00141
      Location:262 → 554
      NT_POLXc; Nucleotidyltransferase (NT) domain of family X DNA Polymerases
      cd17715
      Location:59 → 143
      BRCT_polymerase_lambda; BRCT domain of DNA polymerase lambda and similar proteins

    5. XM_008845596.3 → XP_008843818.1  DNA polymerase lambda isoform X2

      Conserved Domains (2) summary
      cd00141
      Location:262 → 576
      NT_POLXc; Nucleotidyltransferase (NT) domain of family X DNA Polymerases
      cd17715
      Location:59 → 143
      BRCT_polymerase_lambda; BRCT domain of DNA polymerase lambda and similar proteins

    6. XM_008845594.3 → XP_008843816.1  DNA polymerase lambda isoform X1

      Conserved Domains (2) summary
      cd00141
      Location:262 → 580
      NT_POLXc; Nucleotidyltransferase (NT) domain of family X DNA Polymerases
      cd17715
      Location:59 → 143
      BRCT_polymerase_lambda; BRCT domain of DNA polymerase lambda and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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