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    EHI_167150 Replication factor C subunit 4, putative [ Entamoeba histolytica HM-1:IMSS ]

    Gene ID: 3409096, updated on 17-May-2024

    Summary

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    Gene symbol
    EHI_167150
    Gene description
    Replication factor C subunit 4, putative
    Locus tag
    EHI_167150
    See related
    AmoebaDB:EHI_167150; VEuPathDB:EHI_167150
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Entamoeba histolytica HM-1:IMSS (strain: HM-1:IMSS)
    Lineage
    Eukaryota; Amoebozoa; Evosea; Archamoebae; Mastigamoebida; Entamoebidae; Entamoeba
    Old locus tag
    44.t00003
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    Genomic context

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    See EHI_167150 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_001914892.1Genomic Context describing neighboring genes Neighboring gene filopodin, putative Neighboring gene uncharacterized protein Neighboring gene ankyrin repeat protein, putative Neighboring gene Ras guanine nucleotide exchange factor, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001914892.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the protist parasite Entamoeba histolytica. Loftus B, et al. Nature, 2005 Feb 24. PMID 15729342
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA clamp loader activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA-templated DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA replication factor C complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Replication factor C subunit 4, putative
    XP_654775.1
    • encoded by transcript EHI_167150A
      similar to Replication factor C subunit 4 (Replication factor C 37 kDa subunit)(RF-C 37 kDa subunit) (RFC37) (Activator 1 37 kDa subunit) (A1 37 kDasubunit). taxon:9606 (Swiss-Prot:P35249) [Homo sapiens;] This functional annotation is a direct result of community participation in an Entamoeba Annotation Jamboree.

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001914892.1 Reference assembly

      Range
      83584..84573
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_649683.1 → XP_654775.1  Replication factor C subunit 4, putative [Entamoeba histolytica HM-1:IMSS]

      See identical proteins and their annotated locations for XP_654775.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A175JK38, A0A5K1UYA4, C4LYB5, M2S0Z0, M3TXM2, M7WDI3, N9V8E1
      Conserved Domains (3) summary
      cd00009
      Location:21 → 161
      AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
      PRK00440
      Location:7 → 318
      rfc; replication factor C small subunit; Reviewed
      pfam08542
      Location:245 → 316
      Rep_fac_C; Replication factor C C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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