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    EHI_014000 Retinoblatoma-binding protein 6, putative [ Entamoeba histolytica HM-1:IMSS ]

    Gene ID: 3409375, updated on 17-May-2024

    Summary

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    Gene symbol
    EHI_014000
    Gene description
    Retinoblatoma-binding protein 6, putative
    Locus tag
    EHI_014000
    See related
    AmoebaDB:EHI_014000; VEuPathDB:EHI_014000
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Entamoeba histolytica HM-1:IMSS (strain: HM-1:IMSS)
    Lineage
    Eukaryota; Amoebozoa; Evosea; Archamoebae; Mastigamoebida; Entamoebidae; Entamoeba
    Old locus tag
    37.t00038
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    Genomic context

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    See EHI_014000 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_001914887.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 3-kinase, putative Neighboring gene uncharacterized protein Neighboring gene myosin-2 heavy chain, putative Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001914887.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the protist parasite Entamoeba histolytica. Loftus B, et al. Nature, 2005 Feb 24. PMID 15729342
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Retinoblatoma-binding protein 6, putative
    XP_655068.1
    • encoded by transcript EHI_014000A
      Weak similarity to SP:Q7Z6E9: Retinoblatoma-binding protein 6 (p53-associated cellular protein oftestis) (Proliferation potential-related protein) (Protein P2P-R)(Retinoblastoma-binding Q protein 1) (Protein RBQ-1). taxon:9606 {Homo sapiens;} / %id: 33.8 / coverage: 314.7% This functional annotation is a direct result of community participation in an Entamoeba Annotation Jamboree.

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001914887.1 Reference assembly

      Range
      33882..35079 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_649976.2 → XP_655068.1  Retinoblatoma-binding protein 6, putative [Entamoeba histolytica HM-1:IMSS]

      See identical proteins and their annotated locations for XP_655068.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A175JIL8, A0A5K1U5H3, C4LXP1, M2RMN1, M3TFG8, M7W5E0, N9TC11
      Conserved Domains (3) summary
      COG5222
      Location:82 → 307
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam13696
      Location:119 → 139
      zf-CCHC_2; Zinc knuckle
      pfam14634
      Location:207 → 247
      zf-RING_5; zinc-RING finger domain
    Nucleotide Protein
    Heading Accession and Version

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