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    EHI_148350 transcription initiation protein SPT4, putative [ Entamoeba histolytica HM-1:IMSS ]

    Gene ID: 3411835, updated on 17-May-2024

    Summary

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    Gene symbol
    EHI_148350
    Gene description
    transcription initiation protein SPT4, putative
    Locus tag
    EHI_148350
    See related
    AmoebaDB:EHI_148350; VEuPathDB:EHI_148350
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Entamoeba histolytica HM-1:IMSS (strain: HM-1:IMSS)
    Lineage
    Eukaryota; Amoebozoa; Evosea; Archamoebae; Mastigamoebida; Entamoebidae; Entamoeba
    Old locus tag
    1.t00120
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    Genomic context

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    See EHI_148350 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_001914861.1Genomic Context describing neighboring genes Neighboring gene pumilio family RNA-binding protein Neighboring gene long-chain-fatty-acid--CoA ligase, putative Neighboring gene uncharacterized protein Neighboring gene DHHC zinc finger domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001914861.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the protist parasite Entamoeba histolytica. Loftus B, et al. Nature, 2005 Feb 24. PMID 15729342
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription, elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DSIF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation protein SPT4, putative
    XP_657505.1
    • encoded by transcript EHI_148350A

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001914861.1 Reference assembly

      Range
      62860..63290 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_652413.1 → XP_657505.1  transcription initiation protein SPT4, putative [Entamoeba histolytica HM-1:IMSS]

      See identical proteins and their annotated locations for XP_657505.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A175JDY6, A0A5K1UFT2, C4LT05, M2R132, M7WZN3, N9T8J9
      Conserved Domains (1) summary
      cd07973
      Location:31 → 123
      Spt4; Transcription elongation factor Spt4
    Nucleotide Protein
    Heading Accession and Version

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