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    OTX2 orthodenticle homeobox 2 [ Aptenodytes forsteri (emperor penguin) ]

    Gene ID: 103907661, updated on 3-Aug-2024

    Summary

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    Gene symbol
    OTX2
    Gene description
    orthodenticle homeobox 2
    Locus tag
    AS27_14287
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aptenodytes forsteri
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Aptenodytes
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See OTX2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    101 current ASM69914v1 (GCF_000699145.1) Unplaced Scaffold NW_008794444.1 (1057992..1061558)

    NW_008794444.1Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 5 subunit mu 1 Neighboring gene exocyst complex component 5 Neighboring gene transmembrane protein 260 Neighboring gene pellino E3 ubiquitin protein ligase family member 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008794444.1 Unplaced Scaffold Reference ASM69914v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein OTX2
    Names
    Homeobox protein OTX2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Aptenodytes forsteri Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM69914v1

    Genomic

    1. NW_008794444.1 Reference ASM69914v1

      Range
      1057992..1061558
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009289877.1 → XP_009288152.1  homeobox protein OTX2

      Conserved Domains (3) summary
      COG5576
      Location:12 → 135
      COG5576; Homeodomain-containing transcription factor [Transcription]
      pfam00046
      Location:18 → 70
      Homeobox; Homeobox domain
      pfam03529
      Location:129 → 210
      TF_Otx; Otx1 transcription factor
    Nucleotide Protein
    Heading Accession and Version

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