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    NSFL1C NSFL1 cofactor [ Serinus canaria (Common canary) ]

    Gene ID: 103818686, updated on 12-Aug-2024

    Summary

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    Gene symbol
    NSFL1C
    Gene description
    NSFL1 cofactor
    See related
    EnsemblRapid:ENSSCAG00000014398
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Serinus canaria
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
    Orthologs
    human mouse all
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    Genomic context

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    See NSFL1C in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_02 current serCan2020 (GCF_022539315.1) 20 NC_066333.1 (7861910..7868510, complement)

    Chromosome 20 - NC_066333.1Genomic Context describing neighboring genes Neighboring gene syndecan binding protein 2 Neighboring gene FKBP prolyl isomerase 1A Neighboring gene tyrosine-protein phosphatase non-receptor type substrate 1-like Neighboring gene uncharacterized LOC115484452

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_066333.1 Chromosome 20 Reference serCan2020 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in membrane fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear membrane reassembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NSFL1 cofactor p47

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference serCan2020 Primary Assembly

    Genomic

    1. NC_066333.1 Reference serCan2020 Primary Assembly

      Range
      7861910..7868510 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009093055.4 → XP_009091303.1  NSFL1 cofactor p47

      UniProtKB/TrEMBL
      A0A8C9NMN0
      Related
      ENSSCAP00000019945.2, ENSSCAT00000022278.2
      Conserved Domains (3) summary
      smart00553
      Location:177 → 269
      SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
      cd14348
      Location:5 → 44
      UBA_p47; UBA-like domain found in NSFL1 cofactor p47 and similar proteins
      cd17162
      Location:288 → 369
      UBX_UBXN2C; Ubiquitin regulatory domain X (UBX) found in NSFL1 cofactor (also known as UBX domain-containing protein 2C (UBXN2C) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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