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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001114184.3 → NP_001107656.1 peptide chain release factor 1-like, mitochondrial isoform 3
See identical proteins and their annotated locations for NP_001107656.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an alternate exon in the 3' coding region, which results in a frameshift and an early stop codon, compared to variant 1. This variant encodes isoform 3, which is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AI479199, AL080276, BC014428, BU853336, BX105260, DA152954
- Consensus CDS
-
CCDS47502.1
- UniProtKB/Swiss-Prot
-
Q9UGC7
- Related
- ENSP00000356200.5, ENST00000367231.9
- Conserved Domains (1) summary
-
- cl27687
Location:63 → 268
- RF-1; RF-1 domain
-
NM_001301047.3 → NP_001287976.1 peptide chain release factor 1-like, mitochondrial isoform 5
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) uses an alternate in-frame splice site in the 5' coding region, and lacks an alternate exon in the 3' coding region, which results in a frameshift and an early stop codon, compared to variant 1. This variant encodes isoform 5, which is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AI434611, AI479199, AK095240, AL080276, BC105973, BU853336, BX105260, DA152954
- Consensus CDS
-
CCDS75540.1
- UniProtKB/Swiss-Prot
-
Q9UGC7
- Related
- ENSP00000356199.1, ENST00000367230.5
- Conserved Domains (2) summary
-
- pfam00472
Location:195 → 232
- RF-1; RF-1 domain
- pfam03462
Location:63 → 185
- PCRF; PCRF domain
-
NM_001301870.2 → NP_001288799.1 peptide chain release factor 1-like, mitochondrial isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. This variant encodes isoform 2, which is shorter than isoform 1.
- Source sequence(s)
-
AI434611, AI479199, AK095240, AK297671, AL080276, BC011873, BU853336, BX105260, DA152954
- UniProtKB/TrEMBL
-
B4DMX1
- Conserved Domains (3) summary
-
- PRK07342
Location:53 → 326
- PRK07342; peptide chain release factor 2; Provisional
- pfam00472
Location:195 → 300
- RF-1; RF-1 domain
- pfam03462
Location:63 → 185
- PCRF; PCRF domain
-
NM_001301871.2 → NP_001288800.1 peptide chain release factor 1-like, mitochondrial isoform 4
See identical proteins and their annotated locations for NP_001288800.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) uses an alternate in-frame splice site in the 5' coding region and uses a downstream start codon compared to variant 1. This variant encodes isoform 4, which has a shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AI434611, AI479199, AK027684, AK095240, AL080276, BC011873, BU853336, BX105260, DA152954
- UniProtKB/TrEMBL
-
X6RKB4
- Related
-
ENST00000464135.5
- Conserved Domains (2) summary
-
- pfam00472
Location:89 → 194
- RF-1; RF-1 domain
- pfam03462
Location:1 → 79
- PCRF; PCRF domain
-
NM_001301872.2 → NP_001288801.1 peptide chain release factor 1-like, mitochondrial isoform 6
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) lacks several exons and its 3' terminal exon extends past a splice site that is used in variant 1. This results in a novel 3' coding region and 3' UTR, compared to variant 1. This variant encodes isoform 6 which is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AI628793, DA152954
- Conserved Domains (1) summary
-
- cl00304
Location:20 → 116
- TP_methylase; S-AdoMet dependent tetrapyrrole methylases
-
NM_019041.7 → NP_061914.3 peptide chain release factor 1-like, mitochondrial isoform 1
See identical proteins and their annotated locations for NP_061914.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AI434611, AI479199, AK095240, AL080276, BC011873, BU853336, BX105260, DA152954
- Consensus CDS
-
CCDS5243.1
- UniProtKB/Swiss-Prot
- B3KTA0, Q3KR06, Q5TF44, Q5TF50, Q96CC5, Q96EX4, Q96K40, Q9UGC7
- UniProtKB/TrEMBL
-
B4DMX1
- Related
- ENSP00000356202.5, ENST00000367233.10
- Conserved Domains (3) summary
-
- COG1186
Location:130 → 353
- PrfB; Protein chain release factor B [Translation, ribosomal structure and biogenesis]
- pfam00472
Location:231 → 336
- RF-1; RF-1 domain
- pfam03462
Location:63 → 221
- PCRF; PCRF domain
RNA
-
NR_126056.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) uses an alternate splice site in an internal exon and lacks an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AI434611, AI479199, AK095240, AL080276, BC011873, BU853336, BX105260, BX376520, DA152954
- Related
-
ENST00000485512.5
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000006.12 Reference GRCh38.p14 Primary Assembly
- Range
-
152987362..153002709 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047418907.1 → XP_047274863.1 peptide chain release factor 1-like, mitochondrial isoform X2
- UniProtKB/TrEMBL
-
X6RKB4
-
XM_047418906.1 → XP_047274862.1 peptide chain release factor 1-like, mitochondrial isoform X2
- UniProtKB/TrEMBL
-
X6RKB4
-
XM_047418905.1 → XP_047274861.1 peptide chain release factor 1-like, mitochondrial isoform X1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060930.1 Alternate T2T-CHM13v2.0
- Range
-
154188665..154204007 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054355684.1 → XP_054211659.1 peptide chain release factor 1-like, mitochondrial isoform X2
- UniProtKB/TrEMBL
-
X6RKB4
-
XM_054355683.1 → XP_054211658.1 peptide chain release factor 1-like, mitochondrial isoform X2
- UniProtKB/TrEMBL
-
X6RKB4
-
XM_054355682.1 → XP_054211657.1 peptide chain release factor 1-like, mitochondrial isoform X1