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    OT_ostta03g00480 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site [ Ostreococcus tauri ]

    Gene ID: 9833117, updated on 16-Nov-2023

    Summary

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    Gene symbol
    OT_ostta03g00480
    Gene description
    Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site
    Locus tag
    OT_ostta03g00480
    Gene type
    protein coding
    RNA name
    Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site
    RefSeq status
    PROVISIONAL
    Organism
    Ostreococcus tauri (strain: RCC4221)
    Lineage
    Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
    Old locus tag
    Ot03g00480
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    Genomic context

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    See OT_ostta03g00480 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_014428.2 (86346..88229, complement)

    Chromosome 3 - NC_014428.2Genomic Context describing neighboring genes Neighboring gene Janus/Ocnus Neighboring gene unnamed product Neighboring gene U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3 Neighboring gene Decaprenyl diphosphate synthase-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_014428.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. Blanc-Mathieu R, et al. BMC Genomics, 2014 Dec 13. PMID 25494611, Free PMC Article
    2. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Derelle E, et al. Proc Natl Acad Sci U S A, 2006 Aug 1. PMID 16868079, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-ubiquitin ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein peptidyl-prolyl isomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_014428.2 Reference assembly

      Range
      86346..88229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022984664.1 → XP_022838407.1  Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site [Ostreococcus tauri]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A096P7F9, A0A1Y5I864
      Conserved Domains (3) summary
      cd01923
      Location:378 → 537
      cyclophilin_RING; cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal ...
      cd16663
      Location:56 → 128
      RING-Ubox_PPIL2; U-box domain, a modified RING finger, found in peptidyl-prolyl cis-trans isomerase-like 2 (PPIL2) and similar proteins
      cl17238
      Location:119 → 177
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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