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    K08D8.4 CUB domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 187144, updated on 2-Nov-2024

    Summary

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    Official Symbol
    K08D8.4
    Official Full Name
    CUB domain-containing protein
    Primary source
    WormBase:WBGene00010658
    Locus tag
    CELE_K08D8.4
    See related
    AllianceGenome:WB:WBGene00010658
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in innate immune response. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See K08D8.4 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    9
    Sequence:
    Chromosome: IV; NC_003282.8 (12907469..12909998, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Membrane protein UL56 Neighboring gene CUB-like domain-containing protein Neighboring gene CUB-like domain-containing protein Neighboring gene CUB-like domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in innate immune response HEP PubMed 

    General protein information

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    Preferred Names
    CUB domain-containing protein
    NP_001023284.1
    • Confirmed by transcript evidence
    NP_001023285.1
    • Confirmed by transcript evidence
    NP_001023287.1
    • Confirmed by transcript evidence
    NP_001367118.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      12907469..12909998 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001028113.4 → NP_001023284.1  CUB domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001023284.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q21330
      Conserved Domains (2) summary
      pfam02408
      Location:17 → 134
      CUB_2; CUB-like domain
      pfam07010
      Location:463 → 544
      Endomucin

    2. NM_001028116.4 → NP_001023287.1  CUB domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001023287.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5CZ40
      Conserved Domains (1) summary
      pfam02408
      Location:17 → 134
      CUB_2; CUB-like domain

    3. NM_001028114.6 → NP_001023285.1  CUB domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001023285.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5CZ42
      Conserved Domains (2) summary
      pfam02408
      Location:17 → 134
      CUB_2; CUB-like domain
      pfam07010
      Location:355 → 436
      Endomucin

    4. NM_001380495.1 → NP_001367118.1  CUB domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5CZ41
      Conserved Domains (1) summary
      pfam02408
      Location:17 → 134
      CUB_2; CUB-like domain

    RNA

    1. NR_131629.1 RNA Sequence

      Status: REVIEWED

    2. NR_131628.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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