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    LOC586437 pygopus homolog 2 [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 586437, updated on 6-Oct-2023

    Summary

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    Gene symbol
    LOC586437
    Gene description
    pygopus homolog 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See LOC586437 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145615.1 (2719866..2722848)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577390.1 (498736..504289, complement)

    NW_022145615.1Genomic Context describing neighboring genes Neighboring gene t-complex 1 Neighboring gene uncharacterized LOC105444646 Neighboring gene mitochondrial ribosomal protein L24 Neighboring gene uncharacterized LOC100888896

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    pygopus homolog 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145615.1 Reference Spur_5.0 Primary Assembly

      Range
      2719866..2722848
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_786220.5 → XP_791313.1  pygopus homolog 2

      UniProtKB/TrEMBL
      A0A7M7RHR8
      Conserved Domains (2) summary
      cd15551
      Location:154 → 207
      PHD_PYGO; PHD finger found in PYGO proteins
      pfam05793
      Location:2 → 66
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    Nucleotide Protein
    Heading Accession and Version

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