U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    MBD4 methyl-CpG binding domain 4, DNA glycosylase [ Rhinopithecus roxellana (golden snub-nosed monkey) ]

    Gene ID: 104676628, updated on 12-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    MBD4
    Gene description
    methyl-CpG binding domain 4, DNA glycosylase
    See related
    Ensembl:ENSRROG00000029136
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rhinopithecus roxellana
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See MBD4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current ASM756505v1 (GCF_007565055.1) 1 NC_044549.1 (50226830..50240302, complement)
    100 previous assembly Rrox_v1 (GCF_000769185.1) Unplaced Scaffold NW_010824783.1 (67745..78042, complement)

    Chromosome 1 - NC_044549.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104676625 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene EF-hand calcium binding domain 12 Neighboring gene intraflagellar transport 122 Neighboring gene rhodopsin

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyrimidine-specific mismatch base pair DNA N-glycosylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    methyl-CpG-binding domain protein 4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Rhinopithecus roxellana Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM756505v1 Primary Assembly

    Genomic

    1. NC_044549.1 Reference ASM756505v1 Primary Assembly

      Range
      50226830..50240302 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030922759.1 → XP_030778619.1  methyl-CpG-binding domain protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A2K6NYN7
      Conserved Domains (2) summary
      smart00391
      Location:79 → 155
      MBD; Methyl-CpG binding domain
      cl23768
      Location:445 → 510
      ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

    2. XM_030926609.1 → XP_030782469.1  methyl-CpG-binding domain protein 4 isoform X4

      UniProtKB/TrEMBL
      A0A2K6NYN7
      Conserved Domains (2) summary
      smart00391
      Location:79 → 155
      MBD; Methyl-CpG binding domain
      cl23768
      Location:445 → 510
      ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

    3. XM_010381504.2 → XP_010379806.1  methyl-CpG-binding domain protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A2K6NYN7
      Related
      ENSRROP00000009390.1
      Conserved Domains (2) summary
      smart00391
      Location:79 → 155
      MBD; Methyl-CpG binding domain
      cl23768
      Location:444 → 509
      ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

    4. XM_030926981.1 → XP_030782841.1  methyl-CpG-binding domain protein 4 isoform X5

      UniProtKB/TrEMBL
      A0A2K6NYN7
      Conserved Domains (2) summary
      smart00391
      Location:79 → 155
      MBD; Methyl-CpG binding domain
      cl23768
      Location:445 → 510
      ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

    5. XM_010381503.2 → XP_010379805.1  methyl-CpG-binding domain protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A2K6NYN3, A0A2K6NYN7
      Related
      ENSRROP00000009387.1
      Conserved Domains (2) summary
      smart00391
      Location:79 → 155
      MBD; Methyl-CpG binding domain
      cl23768
      Location:445 → 510
      ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.