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    LOC109121387 uncharacterized LOC109121387 [ Vitis vinifera (wine grape) ]

    Gene ID: 109121387, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC109121387
    Gene description
    uncharacterized LOC109121387
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC109121387 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 2 NC_081806.1 (688444..690724)
    102 previous assembly 12X (GCF_000003745.3) 2 NC_012008.3 (868004..869920)

    Chromosome 2 - NC_081806.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100854951 Neighboring gene uncharacterized LOC100262093 Neighboring gene uncharacterized LOC132254995 Neighboring gene microRNA MIR319c Neighboring gene BTB/POZ domain-containing protein POB1 Neighboring gene 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic Neighboring gene uncharacterized LOC100244944

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC109121387

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081806.1 Reference ASM3070453v1 Primary Assembly

      Range
      688444..690724
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010660404.3 → XP_010658706.1  uncharacterized protein LOC109121387

      UniProtKB/TrEMBL
      A0A438E6E0
      Conserved Domains (1) summary
      pfam06697
      Location:29 → 283
      DUF1191; Protein of unknown function (DUF1191)
    Nucleotide Protein
    Heading Accession and Version

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