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    LOC100854780 protein MKS1 [ Vitis vinifera (wine grape) ]

    Gene ID: 100854780, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100854780
    Gene description
    protein MKS1
    Locus tag
    VIT_00001661001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100854780 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (14092380..14093965)
    102 previous assembly 12X (GCF_000003745.3) 18 NC_012024.3 (14033408..14034910)

    Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At3g47570 Neighboring gene ABC transporter G family member 22 Neighboring gene uncharacterized LOC104882625 Neighboring gene transfer RNA proline (anticodon AGG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein MKS1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

      Range
      14092380..14093965
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010666668.3 → XP_010664970.1  protein MKS1

      See identical proteins and their annotated locations for XP_010664970.1

      UniProtKB/TrEMBL
      A0A438HKR7, A5C6Y5
      Conserved Domains (1) summary
      pfam05678
      Location:54 → 76
      VQ; VQ motif
    Nucleotide Protein
    Heading Accession and Version

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