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    ycaR PF03966 family protein YcaR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945537, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ycaR
    Official Full Name
    PF03966 family protein YcaR
    Primary source
    ECOCYC:G6472
    Locus tag
    b0917
    See related
    ASAP:ABE-0003120
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0908
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    Genomic context

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    Sequence:
    NC_000913.3 (970673..970855)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ATP-binding lipopolysaccharide transport protein Neighboring gene tetraacyldisaccharide 4'-kinase Neighboring gene interstrand DNA crosslink repair glycosylase Neighboring gene 3-deoxy-manno-octulosonate cytidylyltransferase Neighboring gene putative phosphotransferase YcbJ Neighboring gene envelope biogenesis factor Neighboring gene tRNA cmo(5)U34 methyltransferase Neighboring gene chromosome partitioning protein MukF

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123
    2. Expression of genes kdsA and kdsB involved in 3-deoxy-D-manno-octulosonic acid metabolism and biosynthesis of enterobacterial lipopolysaccharide is growth phase regulated primarily at the transcriptional level in Escherichia coli K-12. Strohmaier H, et al. J Bacteriol, 1995 Aug. PMID 7543480, Free PMC Article
    3. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PF03966 family protein YcaR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      970673..970855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415437.1 PF03966 family protein YcaR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415437.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A377F6L7
      Conserved Domains (1) summary
      PRK11827
      Location:1 → 60
      PRK11827; protein YcaR
    Nucleotide Protein
    Heading Accession and Version

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