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    LOC105123582 primary amine oxidase [ Populus euphratica (Euphrates poplar) ]

    Gene ID: 105123582, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC105123582
    Gene description
    primary amine oxidase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus euphratica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC105123582 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current PopEup_1.0 (GCF_000495115.1) Unplaced Scaffold NW_011499857.1 (766148..770446)

    NW_011499857.1Genomic Context describing neighboring genes Neighboring gene primary amine oxidase-like Neighboring gene primary amine oxidase-like Neighboring gene primary amine oxidase-like Neighboring gene thermospermine synthase ACAULIS5-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011499857.1 Unplaced Scaffold Reference PopEup_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables primary methylamine oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables quinone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    primary amine oxidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus euphratica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PopEup_1.0 Primary Assembly

    Genomic

    1. NW_011499857.1 Reference PopEup_1.0 Primary Assembly

      Range
      766148..770446
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011023239.1 → XP_011021541.1  primary amine oxidase

      UniProtKB/TrEMBL
      A0AAJ6U2V1
      Conserved Domains (4) summary
      PLN02566
      Location:18 → 663
      PLN02566; amine oxidase (copper-containing)
      pfam01179
      Location:256 → 662
      Cu_amine_oxid; Copper amine oxidase, enzyme domain
      pfam02727
      Location:39 → 128
      Cu_amine_oxidN2; Copper amine oxidase, N2 domain
      pfam02728
      Location:134 → 231
      Cu_amine_oxidN3; Copper amine oxidase, N3 domain
    Nucleotide Protein
    Heading Accession and Version

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