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    LOC106339571 thiocyanate methyltransferase 1 [ Brassica oleracea (wild cabbage) ]

    Gene ID: 106339571, updated on 30-Oct-2024

    Summary

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    Gene symbol
    LOC106339571
    Gene description
    thiocyanate methyltransferase 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica oleracea
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
    Also known as
    tmt1
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    Genomic context

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    See LOC106339571 in Genome Data Viewer
    Location:
    chromosome: C4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current BOL (GCF_000695525.1) C4 NC_027751.1 (2844185..2846295, complement)

    Chromosome C4 - NC_027751.1Genomic Context describing neighboring genes Neighboring gene polygalacturonase-like Neighboring gene polygalacturonase Neighboring gene probable thiol methyltransferase 1 Neighboring gene probable thiol methyltransferase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_027751.1 Chromosome C4 Reference BOL Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and functional expression of two plant thiol methyltransferases: a new class of enzymes involved in the biosynthesis of sulfur volatiles. Attieh J, et al. Plant Mol Biol, 2002 Oct. PMID 12369626
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-adenosylmethionine-dependent methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thiocyanate methyltransferase 1
    Names
    thiol methyltransferase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BOL Primary Assembly

    Genomic

    1. NC_027751.1 Reference BOL Primary Assembly

      Range
      2844185..2846295 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013778402.1 → XP_013633856.1  thiocyanate methyltransferase 1 isoform X1

      Conserved Domains (2) summary
      COG0500
      Location:59 → 194
      SmtA; SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only]
      cl17173
      Location:48 → 183
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    2. XM_013778403.1 → XP_013633857.1  thiocyanate methyltransferase 1 isoform X2

      UniProtKB/TrEMBL
      A0A0D3BPN3
      Conserved Domains (2) summary
      COG0500
      Location:91 → 248
      SmtA; SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only]
      pfam05724
      Location:53 → 237
      TPMT; Thiopurine S-methyltransferase (TPMT)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93V78.1 GenPept UniProtKB/Swiss-Prot:Q93V78

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