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    RPL15 ribosomal protein L15 [ Ailuropoda melanoleuca (giant panda) ]

    Gene ID: 100499572, updated on 8-Mar-2024

    Summary

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    Gene symbol
    RPL15
    Gene description
    ribosomal protein L15
    Locus tag
    PANDA_012036
    See related
    Ensembl:ENSAMEG00000003497
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ailuropoda melanoleuca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
    Orthologs
    human mouse all
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    Genomic context

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    See RPL15 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current ASM200744v2 (GCF_002007445.1) 6 NC_048223.1 (25315558..25319819)

    Chromosome 6 - NC_048223.1Genomic Context describing neighboring genes Neighboring gene cell division cycle-associated protein 3-like Neighboring gene ubiquitin conjugating enzyme E2 E1 Neighboring gene NFKB inhibitor interacting Ras like 1 Neighboring gene nuclear receptor subfamily 1 group D member 2 Neighboring gene thyroid hormone receptor beta

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_048223.1 Chromosome 6 Reference ASM200744v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein eL15; 60S ribosomal protein L15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001304882.1 → NP_001291811.1  large ribosomal subunit protein eL15

      See identical proteins and their annotated locations for NP_001291811.1

      Status: PROVISIONAL

      Source sequence(s)
      HM047806
      UniProtKB/TrEMBL
      A0A7N5KAF9, D7RAF7
      Related
      ENSAMEP00000003684.2, ENSAMET00000003832.2
      Conserved Domains (1) summary
      pfam00827
      Location:2 → 191
      Ribosomal_L15e; Ribosomal L15

    RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM200744v2 Primary Assembly

    Genomic

    1. NC_048223.1 Reference ASM200744v2 Primary Assembly

      Range
      25315558..25319819
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011229532.3 → XP_011227834.2  60S ribosomal protein L15 isoform X1

      UniProtKB/TrEMBL
      A0A7N5KAF9, D7RAF7
      Conserved Domains (1) summary
      pfam00827
      Location:2 → 191
      Ribosomal_L15e; Ribosomal L15
    Nucleotide Protein
    Heading Accession and Version

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