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    RPS8 ribosomal protein S8 [ Ailuropoda melanoleuca (giant panda) ]

    Gene ID: 100475346, updated on 8-Mar-2024

    Summary

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    Gene symbol
    RPS8
    Gene description
    ribosomal protein S8
    Locus tag
    PANDA_016005
    See related
    Ensembl:ENSAMEG00000014147
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ailuropoda melanoleuca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See RPS8 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current ASM200744v2 (GCF_002007445.1) 2 NC_048219.1 (21070454..21072614)
    102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218368.1 (605241..607401)

    Chromosome 2 - NC_048219.1Genomic Context describing neighboring genes Neighboring gene ATP synthase subunit g, mitochondrial-like Neighboring gene small nucleolar RNA SNORD55/SNORD39 Neighboring gene small nucleolar RNA SNORD46 Neighboring gene small nucleolar RNA SNORD38 Neighboring gene small nucleolar RNA SNORD38 Neighboring gene bestrophin 4 Neighboring gene polo like kinase 3 Neighboring gene dynein light chain Tctex-type 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein eS8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001304920.1 → NP_001291849.1  small ribosomal subunit protein eS8

      See identical proteins and their annotated locations for NP_001291849.1

      Status: PROVISIONAL

      Source sequence(s)
      HQ318013
      UniProtKB/TrEMBL
      D2HUN9, F2X209
      Related
      ENSAMEP00000014916.2, ENSAMET00000015530.2
      Conserved Domains (1) summary
      PTZ00148
      Location:1 → 206
      PTZ00148; 40S ribosomal protein S8; Provisional

    RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM200744v2 Primary Assembly

    Genomic

    1. NC_048219.1 Reference ASM200744v2 Primary Assembly

      Range
      21070454..21072614
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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