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    LOC105312187 E3 ubiquitin-protein ligase TRIM71-like [ Amphimedon queenslandica ]

    Gene ID: 105312187, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC105312187
    Gene description
    E3 ubiquitin-protein ligase TRIM71-like
    See related
    EnsemblRapid:LOC105312187
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amphimedon queenslandica
    Lineage
    Eukaryota; Metazoa; Porifera; Demospongiae; Heteroscleromorpha; Haplosclerida; Niphatidae; Amphimedon
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    Genomic context

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    See LOC105312187 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current v1.0 (GCF_000090795.1) Unplaced Scaffold NW_003546297.1 (222492..224856, complement)

    NW_003546297.1Genomic Context describing neighboring genes Neighboring gene adenosine deaminase-like Neighboring gene uncharacterized protein YwbO-like Neighboring gene germinal-center associated nuclear protein-like Neighboring gene facilitated trehalose transporter Tret1-like Neighboring gene TNF receptor-associated factor 5-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003546297.1 Unplaced Scaffold Reference v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM71-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amphimedon queenslandica Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v1.0 Primary Assembly

    Genomic

    1. NW_003546297.1 Reference v1.0 Primary Assembly

      Range
      222492..224856 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011404645.2 → XP_011402947.1  E3 ubiquitin-protein ligase TRIM71-like

      UniProtKB/TrEMBL
      A0A1X7V851
      Related
      XP_011402947.1, XM_011404645.2
      Conserved Domains (3) summary
      COG3391
      Location:484 → 740
      YncE; DNA-binding beta-propeller fold protein YncE [General function prediction only]
      cd00162
      Location:14 → 76
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      cd05819
      Location:516 → 741
      NHL; NHL repeat unit of beta-propeller proteins
    Nucleotide Protein
    Heading Accession and Version

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