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    tsen15 TSEN15 tRNA splicing endonuclease subunit [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101164841, updated on 8-Mar-2024

    Summary

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    Gene symbol
    tsen15
    Gene description
    TSEN15 tRNA splicing endonuclease subunit
    See related
    EnsemblRapid:ENSORLG00000025938
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
    human zebrafish all
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    Genomic context

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    See tsen15 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 17 NC_019875.2 (13670579..13676436, complement)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 17 NC_019875.1 (13936650..13943001, complement)

    Chromosome 17 - NC_019875.2Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C1orf21 homolog Neighboring gene carbonic anhydrase Neighboring gene SEC22 homolog B, vesicle trafficking protein a Neighboring gene uncharacterized LOC101165098 Neighboring gene apolipophorins-like Neighboring gene uncharacterized LOC101165344

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA-splicing endonuclease subunit Sen15
    Names
    tRNA splicing endonuclease subunit 15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019875.2 Reference ASM223467v1 Primary Assembly

      Range
      13670579..13676436 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004078889.4 → XP_004078937.2  tRNA-splicing endonuclease subunit Sen15

      UniProtKB/TrEMBL
      A0A3P9HLW4, H2LWL2
      Related
      ENSORLP00000010502.3, ENSORLT00000010503.3
      Conserved Domains (1) summary
      pfam09631
      Location:40 → 130
      Sen15; Sen15 protein
    Nucleotide Protein
    Heading Accession and Version

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