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    OPN1SW opsin 1, short wave sensitive [ Microcebus murinus (gray mouse lemur) ]

    Gene ID: 105884845, updated on 13-Mar-2024

    Summary

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    Gene symbol
    OPN1SW
    Gene description
    opsin 1, short wave sensitive
    See related
    Ensembl:ENSMICG00000045275
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Microcebus murinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Microcebus
    Also known as
    SWS; SWS1
    Orthologs
    human mouse all
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    Genomic context

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    See OPN1SW in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current Mmur_3.0 (GCF_000165445.2) 11 NC_033670.1 (22586617..22593572)
    100 previous assembly Mmur_2.0 (GCF_000165445.1) Unplaced Scaffold NW_012198463.1 (3854157..3860061, complement)

    Chromosome 11 - NC_033670.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 136 Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene calumenin Neighboring gene golgi associated RAB2 interactor 1B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phototransduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in visual perception IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in photoreceptor outer segment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    short-wave-sensitive opsin 1
    Names
    opsin 1 (cone pigments), short-wave-sensitive
    short-wave sensitive type 1 opsin
    short-wavelength-sensitive opsin protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Microcebus murinus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmur_3.0 Primary Assembly

    Genomic

    1. NC_033670.1 Reference Mmur_3.0 Primary Assembly

      Range
      22586617..22593572
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012789158.1 → XP_012644612.1  short-wave-sensitive opsin 1 isoform X3

      UniProtKB/TrEMBL
      A0A8B7I1U0, M9T1Y7
      Conserved Domains (2) summary
      pfam00001
      Location:14 → 265
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:14 → 283
      7tm_4; Olfactory receptor

    2. XM_012789157.2 → XP_012644611.1  short-wave-sensitive opsin 1 isoform X2

      UniProtKB/TrEMBL
      A0A8B7I3V6, M9T1Y7, M9T7N7
      Conserved Domains (1) summary
      pfam00001
      Location:53 → 304
      7tm_1; 7 transmembrane receptor (rhodopsin family)

    3. XM_012789156.1 → XP_012644610.1  short-wave-sensitive opsin 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C5Y1D6, M9T1Y7
      Related
      ENSMICP00000044296.1, ENSMICT00000069310.1
      Conserved Domains (2) summary
      pfam00001
      Location:53 → 304
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:41 → 322
      7tm_4; Olfactory receptor
    Nucleotide Protein
    Heading Accession and Version

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