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    LOC752803 endophilin-B1 [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 752803, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC752803
    Gene description
    endophilin-B1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See LOC752803 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145610.1 (6066090..6092210, complement)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577291.1 (360102..388527, complement)

    NW_022145610.1Genomic Context describing neighboring genes Neighboring gene sodium- and chloride-dependent neutral and basic amino acid transporter B(0+) Neighboring gene peptidase, mitochondrial processing subunit alpha Neighboring gene probable flavin-containing monoamine oxidase A Neighboring gene solute carrier family 35 member G1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    endophilin-B1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145610.1 Reference Spur_5.0 Primary Assembly

      Range
      6066090..6092210 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011673544.2 → XP_011671846.1  endophilin-B1 isoform X2

      UniProtKB/TrEMBL
      A0A7M7HFN0
      Conserved Domains (2) summary
      cd07594
      Location:20 → 257
      BAR_Endophilin_B; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B
      cd11802
      Location:309 → 360
      SH3_Endophilin_B; Src homology 3 domain of Endophilin-B

    2. XM_001180189.4 → XP_001180189.1  endophilin-B1 isoform X4

      UniProtKB/TrEMBL
      A0A7M7FZV6
      Conserved Domains (2) summary
      cd07594
      Location:22 → 250
      BAR_Endophilin_B; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B
      cd11802
      Location:302 → 353
      SH3_Endophilin_B; Src homology 3 domain of Endophilin-B

    3. XM_011673543.2 → XP_011671845.1  endophilin-B1 isoform X1

      UniProtKB/TrEMBL
      A0A7M7HMG7
      Conserved Domains (2) summary
      cd07594
      Location:22 → 259
      BAR_Endophilin_B; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B
      cd11802
      Location:311 → 362
      SH3_Endophilin_B; Src homology 3 domain of Endophilin-B

    4. XM_011673546.2 → XP_011671848.1  endophilin-B1 isoform X3

      UniProtKB/TrEMBL
      A0A7M7HFR0
      Conserved Domains (2) summary
      cd07594
      Location:22 → 254
      BAR_Endophilin_B; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B
      cd11802
      Location:306 → 357
      SH3_Endophilin_B; Src homology 3 domain of Endophilin-B

    5. XM_030997942.1 → XP_030853802.1  endophilin-B1 isoform X5

      UniProtKB/TrEMBL
      A0A7M7PND1
    Nucleotide Protein
    Heading Accession and Version

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