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    TPBG trophoblast glycoprotein [ Cercocebus atys (sooty mangabey) ]

    Gene ID: 105588075, updated on 13-Mar-2024

    Summary

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    Gene symbol
    TPBG
    Gene description
    trophoblast glycoprotein
    See related
    Ensembl:ENSCATG00000017655
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cercocebus atys
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
    Orthologs
    human mouse all
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    Genomic context

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    See TPBG in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012000865.1 (7962510..7970482)

    NW_012000865.1Genomic Context describing neighboring genes Neighboring gene inhibitor of Bruton tyrosine kinase Neighboring gene single-stranded DNA-binding protein 2 pseudogene Neighboring gene uncharacterized LOC105588076 Neighboring gene uncharacterized LOC105588077

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_012000865.1 Unplaced Scaffold Reference Caty_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trophoblast glycoprotein

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Caty_1.0

    Genomic

    1. NW_012000865.1 Reference Caty_1.0

      Range
      7962510..7970482
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012064903.1 → XP_011920293.1  trophoblast glycoprotein

      See identical proteins and their annotated locations for XP_011920293.1

      UniProtKB/TrEMBL
      A0A2K5KXE2
      Conserved Domains (5) summary
      smart00013
      Location:61 → 95
      LRRNT; Leucine rich repeat N-terminal domain
      smart00082
      Location:294 → 345
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:73 → 95
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:234 → 271
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:91 → 154
      LRR_8; Leucine rich repeat

    2. XM_012064905.1 → XP_011920295.1  trophoblast glycoprotein

      See identical proteins and their annotated locations for XP_011920295.1

      UniProtKB/TrEMBL
      A0A2K5KXE2
      Conserved Domains (5) summary
      smart00013
      Location:61 → 95
      LRRNT; Leucine rich repeat N-terminal domain
      smart00082
      Location:294 → 345
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:73 → 95
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:234 → 271
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:91 → 154
      LRR_8; Leucine rich repeat

    3. XM_012064906.1 → XP_011920296.1  trophoblast glycoprotein

      See identical proteins and their annotated locations for XP_011920296.1

      UniProtKB/TrEMBL
      A0A2K5KXE2
      Conserved Domains (5) summary
      smart00013
      Location:61 → 95
      LRRNT; Leucine rich repeat N-terminal domain
      smart00082
      Location:294 → 345
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:73 → 95
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:234 → 271
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:91 → 154
      LRR_8; Leucine rich repeat

    4. XM_012064907.1 → XP_011920297.1  trophoblast glycoprotein

      See identical proteins and their annotated locations for XP_011920297.1

      UniProtKB/TrEMBL
      A0A2K5KXE2
      Related
      ENSCATP00000005366.1, ENSCATT00000020229.1
      Conserved Domains (5) summary
      smart00013
      Location:61 → 95
      LRRNT; Leucine rich repeat N-terminal domain
      smart00082
      Location:294 → 345
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:73 → 95
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:234 → 271
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:91 → 154
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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